y
Basic Information | |
---|---|
Species | Oryza sativa |
Cazyme ID | LOC_Os06g35300.1 |
Family | GH28 |
Protein Properties | Length: 330 Molecular Weight: 35115.4 Isoelectric Point: 8.6517 |
Chromosome | Chromosome/Scaffold: 6 Start: 20581980 End: 20583058 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 22 | 303 | 0 |
KAACAGTGKQTIVFPKGDFVTGPFNFTGPCKGDIVIQLDGNLLGSTDLALFKVNWMEIKRVDNLEFSGKGKIDGQGAAVWSKNTCAKKYICKILPNSLVL DFVNNGLVSGISLVNPKFFHMNMFKCKNITIKDLTITAPEDSPNTDDIHICDSSKISIIDTVIGTGDDCISIGPGTEGINISGVTCGPGYGISVGSLGRY KDEKDVTDVTVKNCVLKKSTNGVRIKSYEDAASVLTTSKFTYKNIKMEDVANPIIIDMKYCPNKICTANGNSKVTIKDITSR |
Full Sequence |
---|
Protein Sequence Length: 330 Download |
MKLGGKGDGK TDSTKAVDEA WKAACAGTGK QTIVFPKGDF VTGPFNFTGP CKGDIVIQLD 60 GNLLGSTDLA LFKVNWMEIK RVDNLEFSGK GKIDGQGAAV WSKNTCAKKY ICKILPNSLV 120 LDFVNNGLVS GISLVNPKFF HMNMFKCKNI TIKDLTITAP EDSPNTDDIH ICDSSKISII 180 DTVIGTGDDC ISIGPGTEGI NISGVTCGPG YGISVGSLGR YKDEKDVTDV TVKNCVLKKS 240 TNGVRIKSYE DAASVLTTSK FTYKNIKMED VANPIIIDMK YCPNKICTAN GNSKVTIKDI 300 TSRISPAPPP RPRPLASSAQ TSCRAPASL* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-53 | 19 | 281 | 267 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-56 | 16 | 300 | 292 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-62 | 16 | 301 | 293 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 25 | 301 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-99 | 20 | 300 | 283 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0003676 | nucleic acid binding |
GO:0004650 | polygalacturonase activity |
GO:0005623 | cell |
GO:0005975 | carbohydrate metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ01274.1 | 0 | 1 | 316 | 1 | 316 | hypothetical protein OsI_23298 [Oryza sativa Indica Group] |
GenBank | EAZ01276.1 | 0 | 1 | 323 | 49 | 373 | hypothetical protein OsI_23299 [Oryza sativa Indica Group] |
GenBank | EAZ37282.1 | 0 | 77 | 329 | 1 | 253 | hypothetical protein OsJ_21620 [Oryza sativa Japonica Group] |
RefSeq | NP_001057814.1 | 0 | 1 | 329 | 1 | 329 | Os06g0545200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001057815.1 | 0 | 1 | 323 | 48 | 372 | Os06g0545400 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-18 | 89 | 303 | 115 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 93 | 301 | 80 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 93 | 301 | 80 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 93 | 301 | 80 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 93 | 301 | 80 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CX102400 | 235 | 16 | 250 | 0 |
FL824111 | 244 | 51 | 294 | 0 |
FL779362 | 254 | 75 | 328 | 0 |
CF480740 | 230 | 34 | 263 | 0 |
FL811271 | 214 | 16 | 229 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|