| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g35370.1 |
| Family | GH28 |
| Protein Properties | Length: 413 Molecular Weight: 43115.4 Isoelectric Point: 7.8881 |
| Chromosome | Chromosome/Scaffold: 6 Start: 20621175 End: 20622856 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 401 | 0 |
| TAACAGTGKQTIVVPKGDFLTGPLNFTGPCKGDIVIQLDGNLLGSTDLALFKSNWIEIMRLESLEISGKGKLDGQGAAVWSKNSCAKKYDCKILPNTLVL DFVNNGLISGISLVNPKFFHMNVFKSKNITIKDVTITAPGDSPNTDGIHMGDSSKISIIDTVIGTGDDCISIGPGTEGVNISGVTCGPGHGISVGSLGRY KDEKDVTDVTVKNCVLKKSTNGVRIKSYEDAASVLTASKFTYENIKMEDVANPIIIDMKYCPNKICTANGNSKVTIKDITFKNITGTSSTPEAVSLLCSD KLPCTGVTLNDIKVEYSGTNNKTMAVCKNAKGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MGFVRALFLL AMVCVAAHAK DYPKEEGAKA EGPAAASGGG GGSTHDVVKL GGKGDGKTDS 60 TKAVNEAWTA ACAGTGKQTI VVPKGDFLTG PLNFTGPCKG DIVIQLDGNL LGSTDLALFK 120 SNWIEIMRLE SLEISGKGKL DGQGAAVWSK NSCAKKYDCK ILPNTLVLDF VNNGLISGIS 180 LVNPKFFHMN VFKSKNITIK DVTITAPGDS PNTDGIHMGD SSKISIIDTV IGTGDDCISI 240 GPGTEGVNIS GVTCGPGHGI SVGSLGRYKD EKDVTDVTVK NCVLKKSTNG VRIKSYEDAA 300 SVLTASKFTY ENIKMEDVAN PIIIDMKYCP NKICTANGNS KVTIKDITFK NITGTSSTPE 360 AVSLLCSDKL PCTGVTLNDI KVEYSGTNNK TMAVCKNAKG TATGCLKELS CF* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-73 | 63 | 398 | 343 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-75 | 66 | 412 | 350 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 5.0e-80 | 63 | 412 | 357 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-116 | 72 | 402 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-121 | 67 | 404 | 340 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ01274.1 | 0 | 48 | 412 | 1 | 365 | hypothetical protein OsI_23298 [Oryza sativa Indica Group] |
| GenBank | EAZ01276.1 | 0 | 1 | 412 | 1 | 413 | hypothetical protein OsI_23299 [Oryza sativa Indica Group] |
| RefSeq | NP_001057815.1 | 0 | 1 | 412 | 1 | 412 | Os06g0545400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001105862.1 | 0 | 4 | 412 | 8 | 410 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | XP_002437275.1 | 0 | 4 | 412 | 8 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 1e-19 | 170 | 403 | 129 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 1e-19 | 170 | 403 | 129 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 2e-19 | 140 | 397 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-19 | 140 | 397 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-19 | 140 | 397 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
