y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os06g35560.1 |
Family | AA7 |
Protein Properties | Length: 535 Molecular Weight: 57135.9 Isoelectric Point: 8.2731 |
Chromosome | Chromosome/Scaffold: 6 Start: 20751034 End: 20752958 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 73 | 529 | 0 |
DTPATPTPVAVVEATDASHVQAAVRCGVGHGVSVRSRSGGHDYEGLSYRSLDAARAFAVVDMAGGALRAVRVDVLGRAAWVGSGATLGEVYYAIANKTSR LGFPGSVGPTVGVGGFLSGGGFGLMLRKHGLASDHVLDATMVEAKGRLLDRAAMGEDLFWAIRGGGGGNFGIVLSWKLRLVPVPATVTVFTVHRSRNQSA TDLLAKWQRVAPSLPSDAFLRVVVQNQNAQFESLYLGTRAGLVAAMADAFPELNVTASDCIEMTWVQSVLYFAFYGTGKPPEMLLDRGTGRPDRYFKAKS DYVQEPMPSQVWETTWSWLLKDGAGLLILDPYGGEMARVAPAATPFPHRQALYNIQYYGFWSESGEAAAAKHMGWIRGVYGEMEPYVSKNPRGAYVNYRD LDLGVNDDGDGGGGVARARYEKATVWGRAYFKANFERLAAVKAKVDPDNYFKNEQSI |
Full Sequence |
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Protein Sequence Length: 535 Download |
MAAAPMSFAF TLLAACISFL HHAPAAAAAA PANQTAGFLD CLAASLPAGV VYTHASRSYQ 60 SVLESSIKNL LFDTPATPTP VAVVEATDAS HVQAAVRCGV GHGVSVRSRS GGHDYEGLSY 120 RSLDAARAFA VVDMAGGALR AVRVDVLGRA AWVGSGATLG EVYYAIANKT SRLGFPGSVG 180 PTVGVGGFLS GGGFGLMLRK HGLASDHVLD ATMVEAKGRL LDRAAMGEDL FWAIRGGGGG 240 NFGIVLSWKL RLVPVPATVT VFTVHRSRNQ SATDLLAKWQ RVAPSLPSDA FLRVVVQNQN 300 AQFESLYLGT RAGLVAAMAD AFPELNVTAS DCIEMTWVQS VLYFAFYGTG KPPEMLLDRG 360 TGRPDRYFKA KSDYVQEPMP SQVWETTWSW LLKDGAGLLI LDPYGGEMAR VAPAATPFPH 420 RQALYNIQYY GFWSESGEAA AAKHMGWIRG VYGEMEPYVS KNPRGAYVNY RDLDLGVNDD 480 GDGGGGVARA RYEKATVWGR AYFKANFERL AAVKAKVDPD NYFKNEQSIP PLPS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 0.0002 | 140 | 532 | 411 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 2.0e-8 | 80 | 222 | 144 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam08031 | BBE | 7.0e-14 | 466 | 530 | 65 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0003674 | molecular_function |
GO:0003824 | catalytic activity |
GO:0005488 | binding |
GO:0005623 | cell |
GO:0008152 | metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ01286.1 | 0 | 1 | 534 | 1 | 531 | hypothetical protein OsI_23311 [Oryza sativa Indica Group] |
GenBank | EAZ37294.1 | 0 | 1 | 534 | 1 | 482 | hypothetical protein OsJ_21634 [Oryza sativa Japonica Group] |
RefSeq | NP_001057827.1 | 0 | 1 | 534 | 1 | 534 | Os06g0548200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130124.1 | 0 | 35 | 519 | 42 | 519 | hypothetical protein LOC100191218 [Zea mays] |
RefSeq | XP_002438539.1 | 0 | 27 | 534 | 10 | 513 | hypothetical protein SORBIDRAFT_10g021670 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 38 | 532 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 38 | 532 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 31 | 532 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 31 | 532 | 4 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 31 | 532 | 4 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |