| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g35630.1 |
| Family | AA7 |
| Protein Properties | Length: 529 Molecular Weight: 56841.9 Isoelectric Point: 8.0289 |
| Chromosome | Chromosome/Scaffold: 6 Start: 20784367 End: 20786141 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 69 | 516 | 0 |
| NNATARPLCIVTPADASHVQAAVLCGRAEGVRLRARSGGHDYEGLSYRSARRGEVFAVVDLGARLRAVSVSGGGDATAWVESGASLGELYYTVAKSNPGL AFPAGVCPTIGVGGHLSGGGISMMSRKYGLAADNILDAKLVNANGELVDRAAMGEDLFWAIRGGGGESFGIVVSWKVRLVQVPTTVTVFVVGRNVDQGAA DVVARWQDVAPSLPPELTIRVIVRGQRATFQSLYLGSCADLVPTMSSMFPELGMTSADCREMSWLQSAALIQFWNPSTPVEALLNRRTSLSTFTKAKSDY VRRAIPSDVWKNILPWFTMNGSGQMLLEPMGGFVGGVPAAATPYPHRSGVLYNIQYIAYWSGDGTAANRWISGLYAFMEPYVSSDPREAYVNFRDLDIGE NAVAPNDVSTFESGKVWGEKYFAGNFERLAAVKAAMDPTDYFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MATLFRNLSL VLTISFLSCH YLSVTSLASS DGFVRCLLQK IPGELVLTPS SSSFADVLVS 60 SIRNPMFFNN ATARPLCIVT PADASHVQAA VLCGRAEGVR LRARSGGHDY EGLSYRSARR 120 GEVFAVVDLG ARLRAVSVSG GGDATAWVES GASLGELYYT VAKSNPGLAF PAGVCPTIGV 180 GGHLSGGGIS MMSRKYGLAA DNILDAKLVN ANGELVDRAA MGEDLFWAIR GGGGESFGIV 240 VSWKVRLVQV PTTVTVFVVG RNVDQGAADV VARWQDVAPS LPPELTIRVI VRGQRATFQS 300 LYLGSCADLV PTMSSMFPEL GMTSADCREM SWLQSAALIQ FWNPSTPVEA LLNRRTSLST 360 FTKAKSDYVR RAIPSDVWKN ILPWFTMNGS GQMLLEPMGG FVGGVPAAAT PYPHRSGVLY 420 NIQYIAYWSG DGTAANRWIS GLYAFMEPYV SSDPREAYVN FRDLDIGENA VAPNDVSTFE 480 SGKVWGEKYF AGNFERLAAV KAAMDPTDYF RNEQSIPPFV GPKQVKKA* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 2.0e-16 | 72 | 519 | 460 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 8.0e-17 | 457 | 517 | 61 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 4.0e-20 | 75 | 217 | 143 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0003824 | catalytic activity |
| GO:0005488 | binding |
| GO:0005829 | cytosol |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD53690.1 | 0 | 1 | 528 | 1 | 528 | putative CPRD2 [Oryza sativa Japonica Group] |
| GenBank | EAZ01289.1 | 0 | 24 | 523 | 26 | 526 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
| GenBank | EEC80786.1 | 0 | 1 | 528 | 1 | 528 | hypothetical protein OsI_23315 [Oryza sativa Indica Group] |
| RefSeq | NP_001057830.1 | 0 | 39 | 528 | 82 | 571 | Os06g0549300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438541.1 | 0 | 3 | 518 | 2 | 522 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 33 | 520 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 33 | 520 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 28 | 520 | 6 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 28 | 520 | 6 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 28 | 520 | 6 | 497 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
