| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g35650.1 |
| Family | AA7 |
| Protein Properties | Length: 527 Molecular Weight: 56494.8 Isoelectric Point: 9.2492 |
| Chromosome | Chromosome/Scaffold: 6 Start: 20808187 End: 20810005 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 75 | 308 | 0 |
| VRPLCVVKPTNASHVQAAVLCGRRHGVRLRVRSGGHDYEGLSYRSVRQEVFAVVDLAGLRSVRVNRRAATAWVDSGATVGEMYYAVAKADAGLAFPAGLC PTIGVGGHFSGGGIGMMMRKYGLSVDNVLDAMVVDANGRLLDKKAMGRDYFWALRGGGGESFGIVLSWKVRLVAVPRTVTVFNIQKTLAQGAVDAVTKWQ TLAPAALPDELTIRVVVQNKQALFQSLYLGTCDQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 527 Download |
| MAASTSLALV LAVCCCCCYA ASVAPLSSAD SSGEFLQCLA AGVPSQLVVT RGSSSFASVL 60 ASSVRNPRFL APGTVRPLCV VKPTNASHVQ AAVLCGRRHG VRLRVRSGGH DYEGLSYRSV 120 RQEVFAVVDL AGLRSVRVNR RAATAWVDSG ATVGEMYYAV AKADAGLAFP AGLCPTIGVG 180 GHFSGGGIGM MMRKYGLSVD NVLDAMVVDA NGRLLDKKAM GRDYFWALRG GGGESFGIVL 240 SWKVRLVAVP RTVTVFNIQK TLAQGAVDAV TKWQTLAPAA LPDELTIRVV VQNKQALFQS 300 LYLGTCDQLL PVMGSRFPEL GMTRADCREM SWLQSMVYIN GGTSSTPVEV LLNRTTSLSV 360 YTKNKSDYVK QAIPSASWEK IFPWFDGAAG AGLIILEPHG GRVGSIADGN TPYPHRSGVL 420 YNIQYVAFWP TTTATPAVPD WIKNVHAFME PFVTSNPRDA YVNYRDLDIG ENAVAGGVTS 480 YENGRVWGEK YFGAANFRRL ALTKGKVDAS DYFRNEQSIP PLVSTK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 2.0e-13 | 460 | 520 | 61 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 7.0e-16 | 73 | 255 | 193 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 1.0e-17 | 77 | 216 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0003824 | catalytic activity |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ01289.1 | 0 | 1 | 526 | 1 | 526 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
| RefSeq | NP_001057831.1 | 0 | 1 | 526 | 1 | 526 | Os06g0549600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438541.1 | 0 | 1 | 525 | 1 | 526 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
| RefSeq | XP_002438542.1 | 0 | 1 | 523 | 3 | 523 | hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor] |
| RefSeq | XP_002438543.1 | 0 | 1 | 526 | 3 | 529 | hypothetical protein SORBIDRAFT_10g021700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 34 | 523 | 12 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 34 | 523 | 12 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 34 | 524 | 10 | 498 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 34 | 524 | 10 | 498 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 34 | 524 | 10 | 498 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
