| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g35700.1 |
| Family | AA7 |
| Protein Properties | Length: 529 Molecular Weight: 56809.7 Isoelectric Point: 8.6804 |
| Chromosome | Chromosome/Scaffold: 6 Start: 20832432 End: 20834494 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 74 | 310 | 0 |
| TNTTRPVWIITPTNASHVQAAVLCGRRNGVRLRIRSGGHDYEGLSYRSERPETFAVLDLVNIRAVRVDAASATAWVDSGATLGEMYYAIGKAGGRIAFPA GLCPTVGVGGHFSGGGFGMLLRKYGLAADNVVDAVLVDAKGRLLDKNSMGSDVFWALRGGAGESFGIVLSWKVKLVAVPPTVTVFNVPVTVSQGAIDVVT RWQAVAPSLPDDLFIRVLVQGQRASFQSLYLGTCDAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MHDANMAMSS RSLGALAAFV FLCSAASMSS SMAATDSFLQ CLSASIPSQL LYTQSSPSYT 60 SVLDAGIRNP KFLTNTTRPV WIITPTNASH VQAAVLCGRR NGVRLRIRSG GHDYEGLSYR 120 SERPETFAVL DLVNIRAVRV DAASATAWVD SGATLGEMYY AIGKAGGRIA FPAGLCPTVG 180 VGGHFSGGGF GMLLRKYGLA ADNVVDAVLV DAKGRLLDKN SMGSDVFWAL RGGAGESFGI 240 VLSWKVKLVA VPPTVTVFNV PVTVSQGAID VVTRWQAVAP SLPDDLFIRV LVQGQRASFQ 300 SLYLGTCDAL LPVMRSRFPE LGMNRSDCRE MTWIQSVPYI YLGSSATVED ILNRTIAMDT 360 SNKATSDYVR QAIGRDTWSA IFGWLARPNA GLMILDPYGG QIGSVAEAAT PFPHRGGVLY 420 NIQYMNFWSA AGGGGGGAAQ RAWIRDFYAF MAPFVSKDPR EAYANYRDLD LGENVVGAGG 480 VSSYDAGKVW GEKYFRGNYQ RLAMAKAQID ADDYFRNEQS IPPLVAGK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 1.0e-8 | 78 | 248 | 178 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 3.0e-13 | 82 | 218 | 138 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| pfam08031 | BBE | 3.0e-14 | 462 | 522 | 61 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0003824 | catalytic activity |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD53702.1 | 0 | 6 | 528 | 1 | 523 | putative CPRD2 [Oryza sativa Japonica Group] |
| GenBank | EAZ01292.1 | 0 | 6 | 528 | 1 | 523 | hypothetical protein OsI_23321 [Oryza sativa Indica Group] |
| RefSeq | NP_001057833.1 | 0 | 1 | 528 | 1 | 528 | Os06g0549900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438542.1 | 0 | 16 | 528 | 12 | 526 | hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor] |
| RefSeq | XP_002438543.1 | 0 | 6 | 524 | 1 | 525 | hypothetical protein SORBIDRAFT_10g021700 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 38 | 525 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 38 | 525 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 33 | 525 | 6 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 33 | 525 | 6 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 33 | 525 | 6 | 497 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
