| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g38510.1 |
| Family | PL1 |
| Protein Properties | Length: 449 Molecular Weight: 50262.1 Isoelectric Point: 8.3218 |
| Chromosome | Chromosome/Scaffold: 6 Start: 22821117 End: 22823478 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 169 | 367 | 0 |
| IIFAKDMIINLKEEMMINSDKTIDGRGAQVRITNGAQVTVQNSNNVIIHNIHIHDILQGKGGMIRDSPEHFGFRTQSDGDGISIFGSTNVWLDHLSLSNC QDGLIDVIAKSTGVTISNCHLTNHNDVMLFGSSDSFSEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKNPTIISQGNRYIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MEVLIRWSKL PAAGSLVLYA VFLLLSAAAT SEANIGEYDE YWQKRKLMAD AAAEATYKRD 60 PFEVTNSFNR AVHRSEEESG RRELAMTKRK KFAGPCKATN PIDRCWRCRA DWVTDRKRLA 120 RCAQGFGRNT TGGLAGKFYL VTDGTDDDVE NPRPGTLRWG VIQDEPLWII FAKDMIINLK 180 EEMMINSDKT IDGRGAQVRI TNGAQVTVQN SNNVIIHNIH IHDILQGKGG MIRDSPEHFG 240 FRTQSDGDGI SIFGSTNVWL DHLSLSNCQD GLIDVIAKST GVTISNCHLT NHNDVMLFGS 300 SDSFSEDQIM QITVAFNHFG RGLVQRMPRC RWGFFHVVNN DYTHWLMYAI GGSKNPTIIS 360 QGNRYIAPPN LAAKRITKQL GATEEEWKNW VWHSEEDLFM EGAYFTTSGG PIQKQFSNKD 420 LIKPKPGSYV TRLTRFAGSI PCVAGKPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 6.0e-15 | 34 | 84 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 1.0e-22 | 124 | 363 | 259 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-64 | 180 | 365 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-70 | 174 | 369 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 33 | 448 | 31 | 444 | unknown [Zea mays] |
| RefSeq | NP_001057945.1 | 0 | 1 | 448 | 1 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150723.1 | 0 | 5 | 448 | 5 | 451 | pectate lyase [Zea mays] |
| RefSeq | XP_002437204.1 | 0 | 5 | 448 | 6 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
| RefSeq | XP_002453531.1 | 0 | 33 | 448 | 32 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 100 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 100 | 440 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-22 | 130 | 356 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.00000000000009 | 178 | 383 | 137 | 364 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.0000000000002 | 178 | 383 | 137 | 364 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
