| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g39060.1 |
| Family | CBM43 |
| Protein Properties | Length: 484 Molecular Weight: 52045.8 Isoelectric Point: 5.7736 |
| Chromosome | Chromosome/Scaffold: 6 Start: 23187192 End: 23189067 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 371 | 451 | 5.6e-23 |
| WCVFDDGAEDKSKLPGNIQYACASGDCTALGYGCSCNGLDEKSNISYAFNMYFQMQDQDVRACDFDGLAKITTKNASARGC | |||
| GH17 | 33 | 348 | 0 |
| VGVNWGSQLSHPLLPKSVVQMLKENGILKVKLFDADPWPVGALVDSGIEVMLGIPNDMLETMNSYGNAQDWVKENVTSYGDKLKIKYVAVGNEPFLKAYN GSFMKTTFPALKNIQKALNEAGVGDKVKATVPLNADVYVSPDNKPSSGAFRPDIQGLMTDMVKFLHEHGSPFVVNIYPFLSLYQSDDFPFEFAFVDGGKT IQDKGGISYSNVFDANYDTLVTALKKAGVPSLKVVVGEVGWPTDGDKNANLKLARRYYDGLLKKLSKKEGTPLRPGKMDVYMFGLFDEDMKSILPGNFER HWGIFTYDGKPKFPMD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 484 Download |
| MAPPPRLPAG AAALLLLLAV ASRAAADGNA VDVGVNWGSQ LSHPLLPKSV VQMLKENGIL 60 KVKLFDADPW PVGALVDSGI EVMLGIPNDM LETMNSYGNA QDWVKENVTS YGDKLKIKYV 120 AVGNEPFLKA YNGSFMKTTF PALKNIQKAL NEAGVGDKVK ATVPLNADVY VSPDNKPSSG 180 AFRPDIQGLM TDMVKFLHEH GSPFVVNIYP FLSLYQSDDF PFEFAFVDGG KTIQDKGGIS 240 YSNVFDANYD TLVTALKKAG VPSLKVVVGE VGWPTDGDKN ANLKLARRYY DGLLKKLSKK 300 EGTPLRPGKM DVYMFGLFDE DMKSILPGNF ERHWGIFTYD GKPKFPMDLS GHGNDKPLAG 360 VPGVEYLPKQ WCVFDDGAED KSKLPGNIQY ACASGDCTAL GYGCSCNGLD EKSNISYAFN 420 MYFQMQDQDV RACDFDGLAK ITTKNASARG CAFPIQIISA AAPAVAGVGL SAAALLALLM 480 VLV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 3.0e-5 | 266 | 340 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 5.0e-16 | 370 | 439 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-29 | 370 | 453 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-72 | 47 | 348 | 305 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR38156.1 | 0 | 27 | 459 | 32 | 465 | unknown [Zea mays] |
| GenBank | EAZ37505.1 | 0 | 1 | 456 | 1 | 456 | hypothetical protein OsJ_21839 [Oryza sativa Japonica Group] |
| RefSeq | NP_001057968.1 | 0 | 1 | 456 | 1 | 456 | Os06g0590600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002275701.1 | 0 | 7 | 460 | 1 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002438620.1 | 0 | 25 | 461 | 33 | 470 | hypothetical protein SORBIDRAFT_10g022940 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 32 | 350 | 1 | 316 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3f55_C | 0 | 32 | 350 | 1 | 316 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3f55_B | 0 | 32 | 350 | 1 | 316 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3f55_A | 0 | 32 | 350 | 1 | 316 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3em5_D | 0 | 32 | 350 | 1 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
