| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g40880.1 |
| Family | GH28 |
| Protein Properties | Length: 420 Molecular Weight: 43676.7 Isoelectric Point: 8.8929 |
| Chromosome | Chromosome/Scaffold: 6 Start: 24379827 End: 24382168 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 406 | 0 |
| CAAPGRAAVVVPAAGGGGGGGGGYLLHPVVFRGPCKGFVEVRVAGVVRAPAGLDAFRGYHEWINFAGIDGLLVTGGGTFDGRGASSWHLNDCPWKPDCVP PPSSIKLGSVRNATITGVTSLDSKFFHVTIVGSHDVEVSHVSIRAPRDSPNTDGVHIQGSTGVRITDTAVATGDDCVSVGPGSADVTVSGVSCGPGHGIS VGSLGRSPGEADVRRLRVSNCTIAGTANGVRIKTWRGGQRSSAAAAAAAAVSGLVFEDIVMRRVRNPIIIDQEYCPYLSCHHQSERRPSVVRISDVKFRN IRGVSATQVAVKLSCSAASPCRGVELRDIDLRYVRRGVATVSRCANVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 420 Download |
| MTPLLQITMS SLIITSWWWL QATCTARQLV FDVRDFGAVA DGQTDNSKAF ERAWAKACAA 60 PGRAAVVVPA AGGGGGGGGG YLLHPVVFRG PCKGFVEVRV AGVVRAPAGL DAFRGYHEWI 120 NFAGIDGLLV TGGGTFDGRG ASSWHLNDCP WKPDCVPPPS SIKLGSVRNA TITGVTSLDS 180 KFFHVTIVGS HDVEVSHVSI RAPRDSPNTD GVHIQGSTGV RITDTAVATG DDCVSVGPGS 240 ADVTVSGVSC GPGHGISVGS LGRSPGEADV RRLRVSNCTI AGTANGVRIK TWRGGQRSSA 300 AAAAAAAVSG LVFEDIVMRR VRNPIIIDQE YCPYLSCHHQ SERRPSVVRI SDVKFRNIRG 360 VSATQVAVKL SCSAASPCRG VELRDIDLRY VRRGVATVSR CANVAGGVAG GTLVPPPCI* 420 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 7.0e-74 | 31 | 406 | 382 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-74 | 11 | 419 | 409 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-76 | 30 | 418 | 394 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-88 | 81 | 404 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-123 | 29 | 418 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85236.1 | 0 | 1 | 419 | 1 | 412 | polygalacturonase precursor [Oryza minuta] |
| GenBank | ACN85327.1 | 0 | 1 | 419 | 1 | 405 | polygalacturonase precursor [Oryza brachyantha] |
| GenBank | EAZ01647.1 | 0 | 22 | 419 | 18 | 415 | hypothetical protein OsI_23683 [Oryza sativa Indica Group] |
| GenBank | EAZ37619.1 | 0 | 22 | 419 | 18 | 415 | hypothetical protein OsJ_21954 [Oryza sativa Japonica Group] |
| RefSeq | NP_001058060.1 | 0 | 1 | 419 | 1 | 419 | Os06g0611400 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-17 | 130 | 388 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 8e-16 | 115 | 331 | 54 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 8e-16 | 115 | 331 | 54 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 8e-16 | 115 | 331 | 54 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 8e-16 | 115 | 331 | 54 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
