| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os06g40890.1 |
| Family | GH28 |
| Protein Properties | Length: 426 Molecular Weight: 44604 Isoelectric Point: 8.4762 |
| Chromosome | Chromosome/Scaffold: 6 Start: 24384025 End: 24386078 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 411 | 0 |
| WRSACAGAGKQTILIPKGDFMTGAMELRGPCNGAVTIQLDGNLLGSNDLSKYPGKKMPNWVEVRHVDNFVISGKGKLDGQGPGVWSKNSCAKNYNCKLLP NTLVLNTVNDGVVSGITLLNAKFFHMNIYRCKDIKISGVTINAPGDSPNTDGIHMGDSSKITIAATTIGTGDDCISIGPGTDGVNITGVTCGPGHGISIG SLGRYKDERDVRDVSVTRCVLRKTTNGLRIKSYEDSVSPVTVSKVSYDGVVMDHVDNPIIIDQKYCPNSICTSKGDSKVSVRDVTFRNITGSSNTPAVVQ LLCSGKLPCSGVAMQDVRVLYGGSDKKTTAVCDHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 426 Download |
| MAFRNHDAAM VLFFFLLMVT TYANAHGHSK KPEEITQGVY GAAAAVAAGP GGTFDITKLG 60 AVGNGRADST GAVMAAWRSA CAGAGKQTIL IPKGDFMTGA MELRGPCNGA VTIQLDGNLL 120 GSNDLSKYPG KKMPNWVEVR HVDNFVISGK GKLDGQGPGV WSKNSCAKNY NCKLLPNTLV 180 LNTVNDGVVS GITLLNAKFF HMNIYRCKDI KISGVTINAP GDSPNTDGIH MGDSSKITIA 240 ATTIGTGDDC ISIGPGTDGV NITGVTCGPG HGISIGSLGR YKDERDVRDV SVTRCVLRKT 300 TNGLRIKSYE DSVSPVTVSK VSYDGVVMDH VDNPIIIDQK YCPNSICTSK GDSKVSVRDV 360 TFRNITGSSN TPAVVQLLCS GKLPCSGVAM QDVRVLYGGS DKKTTAVCDH ALGKSTGCLK 420 ELACL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 5.0e-70 | 53 | 417 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 6.0e-71 | 54 | 425 | 376 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-74 | 54 | 425 | 373 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-92 | 81 | 408 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-112 | 53 | 417 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85237.1 | 0 | 1 | 425 | 1 | 422 | exopolygalacturonase precursor [Oryza minuta] |
| GenBank | ACN85300.1 | 0 | 1 | 425 | 1 | 413 | exopolygalacturonase precursor [Oryza coarctata] |
| GenBank | EEC80963.1 | 0 | 10 | 425 | 1 | 416 | hypothetical protein OsI_23684 [Oryza sativa Indica Group] |
| GenBank | EEE66006.1 | 0 | 10 | 425 | 1 | 416 | hypothetical protein OsJ_21955 [Oryza sativa Japonica Group] |
| RefSeq | NP_001058061.1 | 0 | 1 | 425 | 1 | 425 | Os06g0611500 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 7e-19 | 153 | 410 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-19 | 153 | 410 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-19 | 153 | 410 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-19 | 153 | 410 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 7e-19 | 153 | 410 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
