| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g06890.1 |
| Family | AA4 |
| Protein Properties | Length: 252 Molecular Weight: 26954.9 Isoelectric Point: 7.6645 |
| Chromosome | Chromosome/Scaffold: 7 Start: 3363008 End: 3370020 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA4 | 98 | 229 | 7.4e-22 |
| PNEFIDELASFLGENLTVDYEERHYHGTPQNSFHKAVNVPDVVVFPRSQDEVQKIVMACNKYKVPIVPYGGATSIEGHTLAPHGGVCINMSLMKKIKSLH VEDMDVVVEPGVGWIELNEYLKPYGLFFPLDP | |||
| Full Sequence |
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| Protein Sequence Length: 252 Download |
| MATAAAALLR LSRSRRPLLP LSSLRLPPPA PYHHHSHSQT PPSSSSSHAR LPAFLSFLAA 60 AAAAGGTTVA LCDSGIDHRV GGKESTELVV RGERKRVPNE FIDELASFLG ENLTVDYEER 120 HYHGTPQNSF HKAVNVPDVV VFPRSQDEVQ KIVMACNKYK VPIVPYGGAT SIEGHTLAPH 180 GGVCINMSLM KKIKSLHVED MDVVVEPGVG WIELNEYLKP YGLFFPLDPG PGATIGGMCA 240 TRCSGSLAVS L* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 1.0e-9 | 136 | 245 | 112 | + glycolate oxidase subunit GlcD; Provisional | ||
| TIGR00387 | glcD | 3.0e-19 | 140 | 245 | 108 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| pfam01565 | FAD_binding_4 | 8.0e-31 | 137 | 249 | 115 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| COG0277 | GlcD | 6.0e-36 | 104 | 249 | 149 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 1.0e-117 | 72 | 249 | 179 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000166 | nucleotide binding |
| GO:0003824 | catalytic activity |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0005739 | mitochondrion |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAG90549.1 | 0 | 1 | 251 | 1 | 251 | unnamed protein product [Oryza sativa Japonica Group] |
| GenBank | EEC81560.1 | 0 | 30 | 235 | 30 | 245 | hypothetical protein OsI_24999 [Oryza sativa Indica Group] |
| GenBank | EEE66611.1 | 0 | 30 | 235 | 30 | 242 | hypothetical protein OsJ_23188 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142976.1 | 0 | 5 | 249 | 2 | 246 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | XP_002461502.1 | 0 | 5 | 249 | 2 | 265 | hypothetical protein SORBIDRAFT_02g003640 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uuv_D | 0.0000000002 | 100 | 245 | 93 | 251 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2uuv_C | 0.0000000002 | 100 | 245 | 93 | 251 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2uuv_B | 0.0000000002 | 100 | 245 | 93 | 251 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2uuv_A | 0.0000000002 | 100 | 245 | 93 | 251 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2uuu_D | 0.0000000002 | 100 | 245 | 93 | 251 | A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EE175024 | 181 | 72 | 252 | 0 |
| CN140030 | 179 | 72 | 249 | 0 |
| DT941837 | 178 | 72 | 249 | 0 |
| EE032563 | 178 | 72 | 249 | 0 |
| DT938830 | 178 | 72 | 249 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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