| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g10680.1 |
| Family | GH28 |
| Protein Properties | Length: 423 Molecular Weight: 45662.2 Isoelectric Point: 8.6613 |
| Chromosome | Chromosome/Scaffold: 7 Start: 5800864 End: 5802591 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 412 | 0 |
| WAAACSSSQPSIVLIPKGKRYLTKHITLSGPCKSSITFMIEGTLVAPPKRSDWSKETIRHWIMFNGVSGLTVAGGGTVDENGKIWWQNSCKTNAKLPCTE APTALTFYSCSNLKVENLKLLNSQQIHMSVEDCTDVRISSLTITAPGTSPNTDGIHITRSKNVQVTGCIIKTGDDCMSIEDGTENLHVKNMVCGPGHGIS IGSLGDHNSEAHVNNVTVDTVRLYGTTNGARIKTWQGGWGYAKNIVFQNMIMENVWNPIIIDQNYCDSATPCKEQTSAVQVSNVVFKNIRGTSASKEAIK LDCSRNVPCQGITLKDVKLTIKGGGSDAKSTCGNAKW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 423 Download |
| MACNVLIFSA YVVVMSFFLC SVHAKVNMNA SFHLTSGDDS LRGRSLESKK VVFDVRKHGA 60 YGDGQHDDTK ALAKAWAAAC SSSQPSIVLI PKGKRYLTKH ITLSGPCKSS ITFMIEGTLV 120 APPKRSDWSK ETIRHWIMFN GVSGLTVAGG GTVDENGKIW WQNSCKTNAK LPCTEAPTAL 180 TFYSCSNLKV ENLKLLNSQQ IHMSVEDCTD VRISSLTITA PGTSPNTDGI HITRSKNVQV 240 TGCIIKTGDD CMSIEDGTEN LHVKNMVCGP GHGISIGSLG DHNSEAHVNN VTVDTVRLYG 300 TTNGARIKTW QGGWGYAKNI VFQNMIMENV WNPIIIDQNY CDSATPCKEQ TSAVQVSNVV 360 FKNIRGTSAS KEAIKLDCSR NVPCQGITLK DVKLTIKGGG SDAKSTCGNA KWKKSGIALC 420 FQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 8.0e-93 | 48 | 417 | 371 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-100 | 53 | 416 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-119 | 80 | 415 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-134 | 46 | 416 | 371 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-140 | 45 | 419 | 377 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57273.1 | 0 | 1 | 422 | 1 | 422 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| DDBJ | BAC57279.1 | 0 | 1 | 419 | 1 | 419 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAZ03178.1 | 0 | 1 | 422 | 1 | 415 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
| GenBank | EAZ39077.1 | 0 | 1 | 422 | 1 | 422 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 1 | 419 | 1 | 419 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-27 | 147 | 395 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 5e-19 | 71 | 370 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-19 | 71 | 370 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 5e-19 | 71 | 370 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 5e-19 | 71 | 370 | 9 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
