| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g10700.1 |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 42363.1 Isoelectric Point: 6.7333 |
| Chromosome | Chromosome/Scaffold: 7 Start: 5812197 End: 5813917 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 377 | 0 |
| AAACSSAKPAVLLIPKGKKYLIKHTTLSGPCKSSISLMVKGSLVASPERSDWSKETIRHWILISGVTGLTVTGGGTIDGNGKIWWQNSCKTNSKLPCTEA PTALTFYSCKNLKVEYLKVVNSQQIQISVEDCTDVMVSRLSITAPETAPNTDGIHITRSRDVEVTDCMIKTGDDCMSIEDGTENLHVKNMVCGPGHGISI GSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSAKNIVFQNMVMDNVWNPIIIDQNYCDSSTPCKQQKSAVEVSNVLFKNIRGTSASEEAIML HCSSSVPCHGITLENVNLTVKGG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MASTVLIVSA SLLALFFFLH SADADVGSNV FSIQSYGAHG DGRHDDTKAL GDTWAAACSS 60 AKPAVLLIPK GKKYLIKHTT LSGPCKSSIS LMVKGSLVAS PERSDWSKET IRHWILISGV 120 TGLTVTGGGT IDGNGKIWWQ NSCKTNSKLP CTEAPTALTF YSCKNLKVEY LKVVNSQQIQ 180 ISVEDCTDVM VSRLSITAPE TAPNTDGIHI TRSRDVEVTD CMIKTGDDCM SIEDGTENLH 240 VKNMVCGPGH GISIGSLGDH NSEAHVNNVT VDNVRLYGTA NGARIKTWQG GKGSAKNIVF 300 QNMVMDNVWN PIIIDQNYCD SSTPCKQQKS AVEVSNVLFK NIRGTSASEE AIMLHCSSSV 360 PCHGITLENV NLTVKGGIDL KHEHPWTLED VEK* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-86 | 28 | 372 | 348 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-98 | 27 | 377 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-105 | 58 | 373 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-128 | 30 | 372 | 343 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-136 | 32 | 377 | 348 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57275.1 | 0 | 1 | 377 | 1 | 377 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
| DDBJ | BAC57279.1 | 0 | 1 | 377 | 1 | 399 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAZ03180.1 | 0 | 1 | 393 | 1 | 393 | hypothetical protein OsI_25333 [Oryza sativa Indica Group] |
| GenBank | EAZ39079.1 | 0 | 1 | 393 | 1 | 393 | hypothetical protein OsJ_23511 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 1 | 377 | 1 | 399 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-26 | 125 | 373 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 5e-21 | 55 | 376 | 12 | 335 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 1e-19 | 128 | 358 | 77 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-19 | 128 | 358 | 77 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-19 | 128 | 358 | 77 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
