| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g10730.1 |
| Family | GH28 |
| Protein Properties | Length: 262 Molecular Weight: 28206.8 Isoelectric Point: 6.9685 |
| Chromosome | Chromosome/Scaffold: 7 Start: 5822834 End: 5824007 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 13 | 237 | 0 |
| LKVENLKVVNSQQIQISVEDCTDVKMSRLSITAPETAPNTDGIHITRSRDVQVTDCTIKTGDDCMSIEDGTKNLHVKNMVCGPGHGISIGSLGDHNSEAH VNNVTVDNVRLYGTTNGARIKTWQGGKGSAKNIVFQNMVMDNVWNPIIIDQNYCDSSTPCKQQKSAVEVSNLLFKNIRGTSASEEAIVLHCSNSVPCHGI TLENVNLTVKGGSSNAKSTCQNAEW | |||
| Full Sequence |
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| Protein Sequence Length: 262 Download |
| MTNKENIGKH FILKVENLKV VNSQQIQISV EDCTDVKMSR LSITAPETAP NTDGIHITRS 60 RDVQVTDCTI KTGDDCMSIE DGTKNLHVKN MVCGPGHGIS IGSLGDHNSE AHVNNVTVDN 120 VRLYGTTNGA RIKTWQGGKG SAKNIVFQNM VMDNVWNPII IDQNYCDSST PCKQQKSAVE 180 VSNLLFKNIR GTSASEEAIV LHCSNSVPCH GITLENVNLT VKGGSSNAKS TCQNAEWKKS 240 GVSVHCPVVS KIDLELVGTS D* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 5.0e-62 | 15 | 242 | 229 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-78 | 15 | 241 | 229 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-78 | 13 | 240 | 228 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-86 | 13 | 247 | 235 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-87 | 13 | 246 | 235 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57275.1 | 0 | 13 | 241 | 166 | 394 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
| DDBJ | BAC57278.1 | 0 | 5 | 261 | 205 | 461 | putative polygalacturonase [Oryza sativa Japonica Group] |
| GenBank | EAZ03180.1 | 0 | 13 | 224 | 166 | 377 | hypothetical protein OsI_25333 [Oryza sativa Indica Group] |
| GenBank | EAZ39082.1 | 0 | 1 | 261 | 61 | 321 | hypothetical protein OsJ_23514 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059161.1 | 0 | 38 | 261 | 1 | 224 | Os07g0208100 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-25 | 6 | 220 | 157 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-17 | 15 | 220 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-17 | 15 | 220 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-17 | 15 | 220 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-17 | 15 | 220 | 113 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO793085 | 196 | 52 | 247 | 0 |
| CA139845 | 216 | 10 | 223 | 0 |
| BJ255300 | 204 | 45 | 247 | 0 |
| EH767961 | 236 | 13 | 247 | 0 |
| FL930633 | 193 | 59 | 251 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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