| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g10740.1 |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 48117.1 Isoelectric Point: 9.0497 |
| Chromosome | Chromosome/Scaffold: 7 Start: 5828419 End: 5830149 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 430 | 0 |
| WAAACSSLQPSIVLVPKGKRYLTKHITLSGPCKSSITFMIEGTLVAPPKRSDWSKETIRHWIMFNGVIGLTVAGGGTVDGNGKIWWQNSCKTNAKLACTE SPTALTFYSCSNLKVENLKLLNSQQIHMSVEDCTNVRISGLTITAPGTSPNTDGIHITRSKNVQVTGCTIKTGDDCMSIEDGTENLHVKNMVCGPGHGIS IGSLGDHNSEAHVNNVTIGTVRLYGTTNGARIKTWQGGRGYAKYIVFQNMIMENVWNPVIIDQNYCDSATPCKKQLSICVNNMEAYNLVFLSQTSAVQIS NVVFKNIRGTSASKEAIKLDCSRNVPCQGITLNDVKLTVKGGGGDAKSTCRNAKW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MACNVLLFSA FVVVMSFFLC SVHAKVNMNA SSLTNGDDSL RGKSSLESKK AVFDVRKHGS 60 YGDGQHDDTK ALSKAWAAAC SSLQPSIVLV PKGKRYLTKH ITLSGPCKSS ITFMIEGTLV 120 APPKRSDWSK ETIRHWIMFN GVIGLTVAGG GTVDGNGKIW WQNSCKTNAK LACTESPTAL 180 TFYSCSNLKV ENLKLLNSQQ IHMSVEDCTN VRISGLTITA PGTSPNTDGI HITRSKNVQV 240 TGCTIKTGDD CMSIEDGTEN LHVKNMVCGP GHGISIGSLG DHNSEAHVNN VTIGTVRLYG 300 TTNGARIKTW QGGRGYAKYI VFQNMIMENV WNPVIIDQNY CDSATPCKKQ LSICVNNMEA 360 YNLVFLSQTS AVQISNVVFK NIRGTSASKE AIKLDCSRNV PCQGITLNDV KLTVKGGGGD 420 AKSTCRNAKW KKSGTVVPQP CASTTTV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-92 | 48 | 441 | 395 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-108 | 14 | 442 | 435 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-114 | 80 | 433 | 354 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-136 | 5 | 446 | 442 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-139 | 23 | 439 | 424 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57273.1 | 0 | 1 | 437 | 1 | 419 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| DDBJ | BAC57279.1 | 0 | 1 | 447 | 1 | 429 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAZ03178.1 | 0 | 1 | 437 | 1 | 412 | hypothetical protein OsI_25331 [Oryza sativa Indica Group] |
| GenBank | EAZ39077.1 | 0 | 1 | 437 | 1 | 419 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 1 | 447 | 1 | 429 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-26 | 147 | 393 | 113 | 370 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 8e-19 | 109 | 374 | 43 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-19 | 109 | 374 | 43 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 8e-19 | 109 | 374 | 43 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 8e-19 | 109 | 374 | 43 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
