| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g14160.1 |
| Family | GH28 |
| Protein Properties | Length: 479 Molecular Weight: 51729.3 Isoelectric Point: 5.7479 |
| Chromosome | Chromosome/Scaffold: 7 Start: 8078909 End: 8082800 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 75 | 412 | 0 |
| ADKGGAELFVPAGRWLTGSFNLISHLTVSLDADAVIIGSQDSSDWPVIDPLPSYGRGRELPGKRHQSLIFGSNLTDVIITGANGTIDGQGELWWNWFHNH TLNYTRPPLLELMYSDRVVISNLTFMNAPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSSNVCIEDCYIRNGDDIVVIKSGWDEYGISFAHPSS NISIRNITGQTRNSAGIAFGSEMSGGISDVRAEGLRFINSVHGIRIKTAPGRGGYVKNIYIADVSMDNVSIAIRITGNYGEHPDDNYDKNALPVISNITI KNVVGVNIGTAGMLLGIQGDIFSNICLSNVSLSSKSAD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MMSRSASALQ VLLVFATVFA ATQWATSSAM YCNDLTASVH RPHSVSITEF GAVNDGVTLN 60 TKAFKNAIFY LSSFADKGGA ELFVPAGRWL TGSFNLISHL TVSLDADAVI IGSQDSSDWP 120 VIDPLPSYGR GRELPGKRHQ SLIFGSNLTD VIITGANGTI DGQGELWWNW FHNHTLNYTR 180 PPLLELMYSD RVVISNLTFM NAPFWNIHPV YCSQVLVQHL TILAPISSPN TDGIDPDSSS 240 NVCIEDCYIR NGDDIVVIKS GWDEYGISFA HPSSNISIRN ITGQTRNSAG IAFGSEMSGG 300 ISDVRAEGLR FINSVHGIRI KTAPGRGGYV KNIYIADVSM DNVSIAIRIT GNYGEHPDDN 360 YDKNALPVIS NITIKNVVGV NIGTAGMLLG IQGDIFSNIC LSNVSLSSKS ADPWNCSLIE 420 GFSNSVAPEI CEQLRPSPGP GQVCYDGNSY PVPAAQQPYK SGATRLQNPF LKFISLYS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-27 | 41 | 416 | 415 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-28 | 37 | 381 | 361 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-31 | 43 | 475 | 451 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-34 | 143 | 417 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-51 | 45 | 386 | 384 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR35653.1 | 0 | 2 | 473 | 8 | 484 | unknown [Zea mays] |
| GenBank | EEC81792.1 | 0 | 1 | 478 | 29 | 506 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
| GenBank | EEE66877.1 | 0 | 1 | 478 | 29 | 506 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059282.1 | 0 | 1 | 478 | 1 | 446 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459610.1 | 0 | 22 | 471 | 37 | 491 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.9937e-43 | 43 | 403 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.9937e-43 | 43 | 403 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.9937e-43 | 43 | 403 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.9937e-43 | 43 | 403 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-16 | 158 | 410 | 117 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
