| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g14160.4 |
| Family | GH28 |
| Protein Properties | Length: 428 Molecular Weight: 46375.2 Isoelectric Point: 6.0733 |
| Chromosome | Chromosome/Scaffold: 7 Start: 8078909 End: 8082800 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 22 | 361 | 0 |
| SFADKGGAELFVPAGRWLTGSFNLISHLTVSLDADAVIIGSQDSSDWPVIDPLPSYGRGRELPGKRHQSLIFGSNLTDVIITGANGTIDGQGELWWNWFH NHTLNYTRPPLLELMYSDRVVISNLTFMNAPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSSNVCIEDCYIRNGDDIVVIKSGWDEYGISFAHP SSNISIRNITGQTRNSAGIAFGSEMSGGISDVRAEGLRFINSVHGIRIKTAPGRGGYVKNIYIADVSMDNVSIAIRITGNYGEHPDDNYDKNALPVISNI TIKNVVGVNIGTAGMLLGIQGDIFSNICLSNVSLSSKSAD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 428 Download |
| MGHFICHVLQ RLDSKRASAT HSFADKGGAE LFVPAGRWLT GSFNLISHLT VSLDADAVII 60 GSQDSSDWPV IDPLPSYGRG RELPGKRHQS LIFGSNLTDV IITGANGTID GQGELWWNWF 120 HNHTLNYTRP PLLELMYSDR VVISNLTFMN APFWNIHPVY CSQVLVQHLT ILAPISSPNT 180 DGIDPDSSSN VCIEDCYIRN GDDIVVIKSG WDEYGISFAH PSSNISIRNI TGQTRNSAGI 240 AFGSEMSGGI SDVRAEGLRF INSVHGIRIK TAPGRGGYVK NIYIADVSMD NVSIAIRITG 300 NYGEHPDDNY DKNALPVISN ITIKNVVGVN IGTAGMLLGI QGDIFSNICL SNVSLSSKSA 360 DPWNCSLIEG FSNSVAPEIC EQLRPSPGPG QVCYDGNSYP VPAAQQPYKS GATRLQNPFL 420 KFISLYS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-21 | 104 | 330 | 234 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-21 | 51 | 365 | 342 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-27 | 85 | 424 | 358 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-34 | 92 | 366 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-45 | 24 | 335 | 354 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR35653.1 | 0 | 22 | 422 | 81 | 484 | unknown [Zea mays] |
| GenBank | EEC81792.1 | 0 | 22 | 427 | 101 | 506 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
| GenBank | EEE66877.1 | 0 | 22 | 427 | 101 | 506 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059282.1 | 0 | 18 | 427 | 37 | 446 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459610.1 | 0 | 21 | 420 | 87 | 491 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-38 | 19 | 352 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-38 | 19 | 352 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-38 | 19 | 352 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-38 | 19 | 352 | 50 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-16 | 6 | 359 | 15 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO865721 | 291 | 22 | 312 | 0 |
| GO799706 | 318 | 119 | 424 | 0 |
| GO869614 | 269 | 22 | 290 | 0 |
| EB668408 | 277 | 60 | 336 | 0 |
| GO882337 | 237 | 22 | 258 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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