| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g27320.1 |
| Family | CBM22 |
| Protein Properties | Length: 1102 Molecular Weight: 123372 Isoelectric Point: 7.0599 |
| Chromosome | Chromosome/Scaffold: 7 Start: 15884357 End: 15890032 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 391 | 524 | 2.4e-30 |
| IVKNPHFDEGLNNWSGRGCNICRHELTAYGNVKPLNGSYFASATGRVHNWNGIQQDITGRVQRKVLYEISSAVRIFGSANDTEVCVTLWVQEYGRERYVS LAKNPASDKQWTHLKGKFLLHAPFSKAVIFVEGP | |||
| CBM22 | 220 | 358 | 1.1e-31 |
| NIISNYDFSEGLHLWNPICCHAYVASQWSGFLDGIRGSSGENYAVVSKRTESWQGLEQDITDKVSAGTAYAVSAYVRVDGNIHTKVEVKATLRLHNTDDS THYSPVGSLLASKEKWEKMEGSFCLTNMPKRVVFYLEGP | |||
| CBM22 | 51 | 189 | 2.1e-32 |
| NILSNNDFSEGLHLWHPNGCHGFVAVEGSGYHHGIRPHSGSNYAVLTRRTHNWQGLEQDITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKLEGDGSS TNYQSVARISASKDCWEKLEGSFELKTLPRRLVFYIEGP | |||
| CBM22 | 559 | 699 | 4.1e-38 |
| NVIHNSAFSHGLSGWSPMGSCRLSIHTESPHMLSAILKDPSAKQHIRGSYILATNRTDVWMGPSQLITDKLRLHTTYRVSAWVRAGSGGHGRYHVNVCLA VDHQWVNGGQVEADGDQWYELKGAFKLEKKPSKVTAYVQGP | |||
| GH10 | 757 | 1039 | 0 |
| QTENSFPFGSCIGRSNIENEDLADFFMKNFNWAVFENELKWYWTEAEQGRLNYKDSDELLEFCRKHNIQVRGHCLFWEVEDSVQPWIRSLHGHHLMAAIQ NRLQSLLSRYKGQFKHHDVNNEMLHGSFYQDRLGNDIRAHMFREAHKLDPSAVLFVNDYNVEDRCDSKSTPEKLIEQIVDLQERGAPVGGIGLQGHITHP VGDIICDSLDKLSILGLPIWITELDVTAENEHIRADDLEVYLREAFAHPSVEGIILWGFWELFMFREHAHLVDVDGTINEAGK | |||
| Full Sequence |
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| Protein Sequence Length: 1102 Download |
| MRRRWGCLSS LCRPRRGGRA AAAPLPQPDP PRLESKEVEE HGASDKVVME NILSNNDFSE 60 GLHLWHPNGC HGFVAVEGSG YHHGIRPHSG SNYAVLTRRT HNWQGLEQDI TEKVTVGTEY 120 IVAAHVRVHG ELNEPVGIQA TLKLEGDGSS TNYQSVARIS ASKDCWEKLE GSFELKTLPR 180 RLVFYIEGPP PGVDLLIDSV TISYKKTERA ASKLVSGTEN IISNYDFSEG LHLWNPICCH 240 AYVASQWSGF LDGIRGSSGE NYAVVSKRTE SWQGLEQDIT DKVSAGTAYA VSAYVRVDGN 300 IHTKVEVKAT LRLHNTDDST HYSPVGSLLA SKEKWEKMEG SFCLTNMPKR VVFYLEGPPA 360 GVDLIIDSVN VTCSGYQQLK EVKVPSGVDT IVKNPHFDEG LNNWSGRGCN ICRHELTAYG 420 NVKPLNGSYF ASATGRVHNW NGIQQDITGR VQRKVLYEIS SAVRIFGSAN DTEVCVTLWV 480 QEYGRERYVS LAKNPASDKQ WTHLKGKFLL HAPFSKAVIF VEGPPAGIDI LVDGLVLSPA 540 RKLHAAPRPR IENVSYGANV IHNSAFSHGL SGWSPMGSCR LSIHTESPHM LSAILKDPSA 600 KQHIRGSYIL ATNRTDVWMG PSQLITDKLR LHTTYRVSAW VRAGSGGHGR YHVNVCLAVD 660 HQWVNGGQVE ADGDQWYELK GAFKLEKKPS KVTAYVQGPP PGVDLRVMGF QIYAVDRKAR 720 FEYLKEKTDK VRKRDVILKF QGSDAANLFG SSIKIQQTEN SFPFGSCIGR SNIENEDLAD 780 FFMKNFNWAV FENELKWYWT EAEQGRLNYK DSDELLEFCR KHNIQVRGHC LFWEVEDSVQ 840 PWIRSLHGHH LMAAIQNRLQ SLLSRYKGQF KHHDVNNEML HGSFYQDRLG NDIRAHMFRE 900 AHKLDPSAVL FVNDYNVEDR CDSKSTPEKL IEQIVDLQER GAPVGGIGLQ GHITHPVGDI 960 ICDSLDKLSI LGLPIWITEL DVTAENEHIR ADDLEVYLRE AFAHPSVEGI ILWGFWELFM 1020 FREHAHLVDV DGTINEAGKR YIALKQEWLT SITGNVDHHG ELKFRGYHGS YTVEVATPSG 1080 KVTRSFVVDK DNAVQVVTLN I* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 3.0e-15 | 220 | 360 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 2.0e-15 | 51 | 191 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-41 | 730 | 1015 | 308 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-73 | 759 | 1045 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-77 | 795 | 1040 | 267 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ03745.1 | 0 | 36 | 1101 | 17 | 1082 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
| GenBank | EAZ39688.1 | 0 | 36 | 1101 | 17 | 1082 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059561.1 | 0 | 1 | 1101 | 1 | 1101 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002301133.1 | 0 | 50 | 1101 | 1 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002459803.1 | 0 | 1 | 1101 | 1 | 1098 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 5e-29 | 750 | 1015 | 25 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 5e-29 | 750 | 1015 | 25 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1nq6_A | 3e-28 | 764 | 1036 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1e0v_A | 1e-27 | 764 | 1014 | 16 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1i1x_A | 1e-27 | 764 | 1035 | 18 | 289 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO850973 | 328 | 683 | 1010 | 0 |
| GT037746 | 297 | 806 | 1102 | 0 |
| GR344668 | 263 | 491 | 753 | 0 |
| GR344668 | 241 | 156 | 381 | 4e-23 |
| GR344668 | 222 | 330 | 535 | 1e-16 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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