| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g41650.1 |
| Family | CE8 |
| Protein Properties | Length: 373 Molecular Weight: 39085 Isoelectric Point: 8.7978 |
| Chromosome | Chromosome/Scaffold: 7 Start: 24961169 End: 24964384 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 75 | 366 | 0 |
| IVVSPDGTGHSRTVQGAVDMVPAGNTRRVKIVVRPGVYREKVTVPITKPFVSLIGMGTGHTVITWHSRASDVGASGHQVGTFYSASVAVEADYFCASHIT FENSAAAAAPGAVGQQAVALRLSGDKTVLYKCRILGTQDTLFDNIGRHYLYNCDIQGSIDFIFGNARSLYQGCTLHAVATSYGAIAASQRSSPSEESGFS FVGCRLTGSGMLYLGRAWGKYSRVVYSYCDLSGIIVPQGWSDWGDQSRTKTVLFGEYNCKGPGASTKQRVPWSRTLTYDEARPFIGRSFING | |||
| Full Sequence |
|---|
| Protein Sequence Length: 373 Download |
| MAATGVLVVV VALVFAVTVA GGGGAGVGGD GGFITWEDLS MPAGAARSST WDDTAGGGGG 60 KRSGGGGGGE QRTTIVVSPD GTGHSRTVQG AVDMVPAGNT RRVKIVVRPG VYREKVTVPI 120 TKPFVSLIGM GTGHTVITWH SRASDVGASG HQVGTFYSAS VAVEADYFCA SHITFENSAA 180 AAAPGAVGQQ AVALRLSGDK TVLYKCRILG TQDTLFDNIG RHYLYNCDIQ GSIDFIFGNA 240 RSLYQGCTLH AVATSYGAIA ASQRSSPSEE SGFSFVGCRL TGSGMLYLGR AWGKYSRVVY 300 SYCDLSGIIV PQGWSDWGDQ SRTKTVLFGE YNCKGPGAST KQRVPWSRTL TYDEARPFIG 360 RSFINGEQWL RL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 1.0e-102 | 75 | 371 | 297 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 3.0e-106 | 74 | 370 | 299 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 2.0e-111 | 75 | 370 | 297 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 3.0e-131 | 74 | 372 | 300 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 1.0e-141 | 34 | 372 | 341 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0009056 | catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82420.1 | 0 | 29 | 372 | 29 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
| GenBank | EEE67559.1 | 0 | 29 | 372 | 29 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060235.1 | 0 | 29 | 324 | 29 | 324 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002463165.1 | 0 | 30 | 324 | 23 | 314 | hypothetical protein SORBIDRAFT_02g038910 [Sorghum bicolor] |
| RefSeq | XP_002522727.1 | 0 | 2 | 372 | 27 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 74 | 371 | 8 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 5.60519e-45 | 76 | 371 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 9e-17 | 64 | 342 | 24 | 339 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.000000000000003 | 86 | 249 | 19 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.000000000000003 | 86 | 249 | 19 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
