| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os07g46190.1 |
| Family | CE8 |
| Protein Properties | Length: 309 Molecular Weight: 33875 Isoelectric Point: 6.6717 |
| Chromosome | Chromosome/Scaffold: 7 Start: 27569369 End: 27571494 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 48 | 305 | 0 |
| ITVDHQGGGDFTLVQSAVNSVPDGNRDWIKIHVNAGSYEEKVTIPSQKQFIVLEGDGSWNTEITFAGHAHASIDELLNHGYSDVGGSATFDSSTFIVLAD NFVARSISFRNTYNKYDKSKPVQAVAALIGGDRSAFYDCAFYGFQDTLCDLKGRHYFHHCYVRGGVDFIFGYGQSIYDNCTLESNMPPPPSPQQPGWVTA HARVTDADPGGLVFKGGSLLGSGQQYLGRAWNQFATVVFYQVSMTNIVVPQGWQPWNS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 309 Download |
| MRERFFSSRF VSKMQPSRHD QLLLLPLLLL LGVFIATSSA AAPVSRTITV DHQGGGDFTL 60 VQSAVNSVPD GNRDWIKIHV NAGSYEEKVT IPSQKQFIVL EGDGSWNTEI TFAGHAHASI 120 DELLNHGYSD VGGSATFDSS TFIVLADNFV ARSISFRNTY NKYDKSKPVQ AVAALIGGDR 180 SAFYDCAFYG FQDTLCDLKG RHYFHHCYVR GGVDFIFGYG QSIYDNCTLE SNMPPPPSPQ 240 QPGWVTAHAR VTDADPGGLV FKGGSLLGSG QQYLGRAWNQ FATVVFYQVS MTNIVVPQGW 300 QPWNSPNV* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02682 | PLN02682 | 9.0e-60 | 33 | 307 | 286 | + pectinesterase family protein |
| PLN02480 | PLN02480 | 4.0e-60 | 46 | 303 | 259 | + Probable pectinesterase |
| PLN02665 | PLN02665 | 9.0e-65 | 40 | 306 | 269 | + pectinesterase family protein |
| PLN02176 | PLN02176 | 2.0e-67 | 38 | 305 | 270 | + putative pectinesterase |
| PLN02497 | PLN02497 | 2.0e-78 | 45 | 304 | 263 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC20793.1 | 0 | 14 | 308 | 1 | 295 | pectin methylesterase-like protein [Oryza sativa Japonica Group] |
| GenBank | EAZ04973.1 | 0 | 14 | 289 | 1 | 278 | hypothetical protein OsI_27154 [Oryza sativa Indica Group] |
| GenBank | EEC82597.1 | 0 | 14 | 308 | 1 | 297 | hypothetical protein OsI_27157 [Oryza sativa Indica Group] |
| GenBank | EEE67729.1 | 0 | 14 | 308 | 1 | 295 | hypothetical protein OsJ_25409 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060498.1 | 0 | 1 | 308 | 1 | 308 | Os07g0655600 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4e-38 | 41 | 304 | 2 | 253 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-28 | 50 | 304 | 7 | 249 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 5e-19 | 19 | 283 | 3 | 274 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 5e-16 | 55 | 300 | 15 | 279 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 5e-16 | 55 | 300 | 15 | 279 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
