| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g01600.1 |
| Family | GH28 |
| Protein Properties | Length: 483 Molecular Weight: 52186.9 Isoelectric Point: 7.2075 |
| Chromosome | Chromosome/Scaffold: 8 Start: 357115 End: 360795 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 111 | 456 | 0 |
| GGGGARLEVPPGRWVTGSFNLTSRFTLFLHHGAIILGSQDPEEWPLIAPLPSYGRGRERLGPRHISLIHGEGLDDVVITGNNGTIDGQGRIWWDLWWNRT LNHTRGHLIELVDSTNIMISNITLRNSPFWTVHPVYCRNVVIRNLTVLAPLNAPNTDGIDPDSSSEVCIEDCYIESGDDLVAVKSGWDQYGISVGKPSSN IIIQRVSGTTPTCSGVGFGSEMSGGISNVIIRDLHVWNSAQAVRIKTDVGRGGYITNITIENVRMEKVKVPIRFSRGADDHSDDKYDRSALPKISDVRIR DVVGVDLQRAPMLEAVHGAVYEGICFRNVSLTVIKRQDRWHCESVY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 483 Download |
| MLPHATAHQP TPSPRPRLLP VAAAALLLAS SYLALTRLPA AAPLAALVAP ATARVDGDRD 60 RDSCAGFYRG GSSGRRAASA SVEEFGAVGD GVTSNTAAFR RAVAALEARA GGGGARLEVP 120 PGRWVTGSFN LTSRFTLFLH HGAIILGSQD PEEWPLIAPL PSYGRGRERL GPRHISLIHG 180 EGLDDVVITG NNGTIDGQGR IWWDLWWNRT LNHTRGHLIE LVDSTNIMIS NITLRNSPFW 240 TVHPVYCRNV VIRNLTVLAP LNAPNTDGID PDSSSEVCIE DCYIESGDDL VAVKSGWDQY 300 GISVGKPSSN IIIQRVSGTT PTCSGVGFGS EMSGGISNVI IRDLHVWNSA QAVRIKTDVG 360 RGGYITNITI ENVRMEKVKV PIRFSRGADD HSDDKYDRSA LPKISDVRIR DVVGVDLQRA 420 PMLEAVHGAV YEGICFRNVS LTVIKRQDRW HCESVYGEAH DVLPAPCEEF RRNGSSSWCG 480 HS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-19 | 172 | 461 | 300 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-19 | 193 | 441 | 263 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-22 | 183 | 414 | 243 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-33 | 178 | 455 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-53 | 82 | 430 | 374 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ05322.1 | 0 | 1 | 482 | 1 | 482 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
| GenBank | EAZ41253.1 | 0 | 1 | 482 | 1 | 482 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060796.1 | 0 | 1 | 482 | 1 | 482 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148255.1 | 0 | 25 | 480 | 35 | 491 | polygalacturonase [Zea mays] |
| RefSeq | XP_002443718.1 | 0 | 4 | 480 | 16 | 495 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-40 | 84 | 445 | 32 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-40 | 84 | 445 | 32 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-40 | 84 | 445 | 32 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-40 | 84 | 445 | 32 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-17 | 193 | 455 | 117 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL761876 | 254 | 122 | 375 | 0 |
| HX186729 | 243 | 227 | 469 | 0 |
| FF588441 | 236 | 126 | 361 | 0 |
| CJ809401 | 244 | 238 | 480 | 0 |
| CJ832431 | 236 | 209 | 444 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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