| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g09230.1 |
| Family | CBM53 |
| Protein Properties | Length: 1862 Molecular Weight: 209192 Isoelectric Point: 4.8125 |
| Chromosome | Chromosome/Scaffold: 8 Start: 5352105 End: 5363367 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 906 | 989 | 4.1e-32 |
| STIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQV | |||
| CBM53 | 1242 | 1330 | 5.8e-35 |
| GTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPV | |||
| CBM53 | 1080 | 1168 | 4.8e-36 |
| GDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHA | |||
| GT5 | 1341 | 1737 | 0 |
| HIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDA GRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKF YGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCR LADSLHGENHGRIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNGVDYALNRQQSLLG | |||
| Full Sequence |
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| Protein Sequence Length: 1862 Download |
| MEMALRPQSL LCPRSRLKVV IRPASSASGG GLAQYFLMTR RYTGSRIVRC MVSSSDCPNR 60 KAKRTISLHT EVASSRGYAP RIAAESSIQE REHINSDEET FDTYNRLLRN ESTEWKKLDT 120 TEVDLSQDVS SSSMRKVDAT DEAKLDILED DLPRNLLNGV TMGEVDMLDE AGAEDDVFEV 180 DLSALHNSTV GKMDAVNEVG TENDLFEVDL SALHSAAVGK VDVVDGAKAK EDLFEMDSLA 240 LHSVTMGKVD AINAAGAEGD KFEVDLSALA SNNSMIEAVN VMDEAKAIED TLEVDLSGNA 300 TSSSTYGEVK FEVDSLGNTS STVMYGPADG AYEPRSDEVT FKVDSSENAS NNVMYGRADV 360 VDESWADEGI FEVDFFTNAS SGAEYGKVDV VDEAKTDDFT FEIDSLEKDS NNKMHGKAHM 420 VDEAWDDEAI FEVDLFGNAS SIPIYGEVNV LDEARADDGK FEVDLLGNTS SNSTHEEVDV 480 VDEAQTGEAT FEVDLLGNAL SSAIYKEVPV MGGAQDDEVD VDFSINASIT ETEKEADAVD 540 EARVEDETFD MDLVGKQISI DSMNDDVVEE GTKHHRYPML SSAFIEVKTI HETPVSLKPE 600 LMSVVMDQEQ DKPISSVYQQ EGSIFNLHAE NQSTVDFHER EQMAITFDKQ KESVAKLSKE 660 DQQTAGLPEQ NMSFDGVHRK SQSIIGLPFQ HQSIVSSPEK YRSIVGFHGQ NQSIISSHKQ 720 DKSIVGVPKK IQSIVGSTKH DDSIVGFRKQ DRSIVSVPEQ KQSIVGFHKQ DLSIVAVSEQ 780 NLSIVAIPRE SQSKQISIVR RHDPLHLKEV ETKDRDGISK KSGGDDDLPH MLFEEELSQV 840 EDVARAIAYK KQHEVDVISL TPDIQESPQD NIDPQELRRM LQELADQNCS MGNKLFVFPE 900 AVKANSTIDV YLNRNLSALA NEPDVHIKGA FNSWRWRPFT ERLHKSELSG DWWSCKLHIP 960 KEAYRLDFVF FNGRLVYDNN DSNDFVLQVE STMDEDSFEE FLVEEKKREL ERVATEEAER 1020 RRHAEEQQRM GEQRAAEQAA REQAKKEIEL KKNKLQNLLS SARTHVDNLW HIEPSTYRQG 1080 DTVRLYYNRN SRPLMHSTEI WMHGGCNSWT DGLSIVERLV ECDDENGDWW YANVHIPEKA 1140 FVLDWVFADG PPGNARNYDN NGRQDFHAIL PNAMTNEEYW VEEENCIYTR LLHEIREREE 1200 AIKIKVEKRA KMKSEMKEKT MRMFLLSQKH IVYTEPLEIR AGTTVDVLYN PSNTVLNGKP 1260 EVWFRWSFNR WMHPSGVLPP KKMVKTEDGC HLKATVSVPS DAYMMDFVFS ESEEGGIYDN 1320 RNGTDYHIPV SGSNAKEPPI HIVHIAVEMA PIAKVGGLAD VVTSLSRAIQ ELGHHVEVIL 1380 PKYNFMNQSN VKNLHVRQSF SLGGTEIKVW FGLVEDLSVY FLEPQNGMFG GGWVYGGNDA 1440 GRFGLFCQSA LEFLLQSGSS PHIIHCHDWS SAPVAWLYKE HYAESRLATA RIIFTIHNLE 1500 FGAHFIGKAM TYCDKATTVS HTYSKEVAGH GAIAPHRGKF YGILNGIDPD IWDPYTDNFI 1560 PMHYTSENVV EGKNAAKRAL QQRFGLQQTD VPIVGIITRL TAQKGIHLIK HALHRTLERN 1620 GQVVLLGSAP DPRIQSDFCR LADSLHGENH GRIYAGSDFI LVPSIFEPCG LTQLVAMRYG 1680 SIPIVRKTGG LYDTVFDVDH DKDRARVLGL EPNGFSFDGA DCNGVDYALN RQQSLLGLKP 1740 AVGSTPSAKG SWSKTGPGTG LPWTTLNCTI QLTNFEAPIQ RWQEKASIGR YYKLNETWLK 1800 VKIFYLSCRY KLTQTWFKVK IFYLSYTYIC RIKTLYSMHK QLWEYVSAMF PILSFNYEYL 1860 I* 1920 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 0.0005 | 72 | 182 | 113 | + synthase/transferase | ||
| TIGR02095 | glgA | 4.0e-125 | 1340 | 1731 | 446 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 3.0e-135 | 1341 | 1731 | 440 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-142 | 1341 | 1731 | 447 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 875 | 1731 | 872 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0009536 | plastid |
| GO:0009987 | cellular process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACY56233.1 | 4e-32 | 131 | 693 | 8 | 558 | soluble starch synthase III-2 [Oryza sativa Indica Group] |
| GenBank | ACY56233.1 | 0 | 236 | 1731 | 1 | 1510 | soluble starch synthase III-2 [Oryza sativa Indica Group] |
| DDBJ | BAD05589.1 | 0 | 1 | 1735 | 1 | 1749 | putative starch synthase DULL1 [Oryza sativa Japonica Group] |
| GenBank | EEC83025.1 | 0 | 3 | 1732 | 1 | 1730 | hypothetical protein OsI_28103 [Oryza sativa Indica Group] |
| GenBank | EEE68179.1 | 0 | 3 | 1732 | 1 | 1730 | hypothetical protein OsJ_26314 [Oryza sativa Japonica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 1340 | 1697 | 1 | 407 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 1340 | 1697 | 1 | 407 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 1340 | 1697 | 1 | 407 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 1340 | 1697 | 1 | 407 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 1340 | 1697 | 1 | 407 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 717 | 869 | 1584 | 0 |
| HO794758 | 535 | 1213 | 1731 | 0 |
| GT033751 | 342 | 1391 | 1718 | 0 |
| HO794758 | 107 | 1073 | 1177 | 0.13 |
| HO794758 | 100 | 895 | 989 | 3.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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