| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g10604.1 |
| Family | CE8 |
| Protein Properties | Length: 412 Molecular Weight: 44863.5 Isoelectric Point: 5.8905 |
| Chromosome | Chromosome/Scaffold: 8 Start: 6242159 End: 6243723 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 88 | 397 | 0 |
| CVDPNGCCNFTTVQAAVNAVPSFSKKRNVVWINKGIYYEKVTVPATKPNITFQGQGFDLTAISWNDTANSSHGTFYSGSVSVFATGFVAKNISFINVAPI PRPGDVGAQAVALRIGGDQAAFWGCGFFGAQDTLHDDRGRHYFKECFIQGSIDFIFGDARSLYENCRVISIADPVPAGVRTITGSVTAHARESVDDNTGY SFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPSRDQYASSLYSVSIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVL PYLNTSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 412 Download |
| MSTKFIVPLS CCISALVLLS SHLHSPAISS FLGILLDLAA PSLPFYLLTS GTTNSTGNHR 60 YRDEYNPLCD DFPPEFPPPD TAAISIFCVD PNGCCNFTTV QAAVNAVPSF SKKRNVVWIN 120 KGIYYEKVTV PATKPNITFQ GQGFDLTAIS WNDTANSSHG TFYSGSVSVF ATGFVAKNIS 180 FINVAPIPRP GDVGAQAVAL RIGGDQAAFW GCGFFGAQDT LHDDRGRHYF KECFIQGSID 240 FIFGDARSLY ENCRVISIAD PVPAGVRTIT GSVTAHARES VDDNTGYSFV NCSIGGTGRI 300 WLGRAWRPYS TVVFAYTSMS DIIASEGWND WNDPSRDQYA SSLYSVSIVT CMTKRTVFYG 360 EYRCTGDGAN LSDRVPYAQK LSDVQVLPYL NTSFIDGDRW LKPYCDSLIS A* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 8.0e-95 | 86 | 402 | 325 | + pectinesterase | ||
| PLN02634 | PLN02634 | 1.0e-100 | 89 | 403 | 322 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-112 | 82 | 403 | 323 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 1.0e-122 | 96 | 403 | 314 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 0 | 29 | 406 | 386 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN08648.1 | 0 | 68 | 402 | 71 | 388 | Pectinesterase [Medicago truncatula] |
| GenBank | EEC83093.1 | 0 | 1 | 411 | 1 | 394 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
| GenBank | EEE68230.1 | 0 | 8 | 411 | 131 | 519 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
| RefSeq | XP_002445213.1 | 0 | 22 | 411 | 30 | 399 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
| RefSeq | XP_002521065.1 | 0 | 68 | 404 | 75 | 394 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4.2039e-45 | 88 | 402 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7e-36 | 84 | 408 | 2 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.000000000000002 | 97 | 395 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 0.000000000000002 | 97 | 395 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 0.000000000000002 | 97 | 395 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GD049499 | 242 | 114 | 355 | 0 |
| CN126550 | 262 | 31 | 292 | 0 |
| GE593794 | 284 | 122 | 405 | 0 |
| EE606596 | 246 | 93 | 338 | 0 |
| FG991891 | 244 | 81 | 324 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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