| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g17390.1 |
| Family | GT9 |
| Protein Properties | Length: 470 Molecular Weight: 51662 Isoelectric Point: 6.9166 |
| Chromosome | Chromosome/Scaffold: 8 Start: 10630309 End: 10634375 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT9 | 191 | 439 | 3.5e-21 |
| LKNRYYDLIISTKLAGIGHALFLFMSSARDKVGYVYPNVNSAGAGLFLTEMFRPPTTNLADSGYNMYQDMLEWIGRPAKGVPEHPVPPLRVSISKKLRAF VEDKYSRAGVEKGKFVVVHGIASDSFANMRSRGDDDCLLPLEHWAEIAKEISSEDNGLKPLFVIPHQKHREEVEETVGKDTNILFITTPGQLTCLINDSV GVVATNTAAVQLANARDKPCVALFSSKEKARLFLPYLEEKKGCTVVASE | |||
| Full Sequence |
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| Protein Sequence Length: 470 Download |
| MQTPTMSTSM ATPAKLPSPP SLPIARQCCC HLLQLGRRGG AGVARASAKK KNPWLDPFDD 60 GPDDEFDYRG AFSGGKQEED PRPPEDPANP YGFLRFPAGY NPELDSLASK VRRDVRRACC 120 VVSGGVYENV LFFPVVQLLR DRYPGVVVDV VASARGKQVY EMCKNVRYAD VYDPDDDWPE 180 PAEYTHQLGV LKNRYYDLII STKLAGIGHA LFLFMSSARD KVGYVYPNVN SAGAGLFLTE 240 MFRPPTTNLA DSGYNMYQDM LEWIGRPAKG VPEHPVPPLR VSISKKLRAF VEDKYSRAGV 300 EKGKFVVVHG IASDSFANMR SRGDDDCLLP LEHWAEIAKE ISSEDNGLKP LFVIPHQKHR 360 EEVEETVGKD TNILFITTPG QLTCLINDSV GVVATNTAAV QLANARDKPC VALFSSKEKA 420 RLFLPYLEEK KGCTVVASET GKLIDIDVEA VKKAVKEFKA APSVALAQT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03789 | GT1_LPS_heptosyltransferase | 0.005 | 330 | 431 | 113 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| TIGR02193 | heptsyl_trn_I | 0.002 | 270 | 414 | 150 | + lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam01075 | Glyco_transf_9 | 0.001 | 191 | 414 | 231 | + Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core. | ||
| cd03789 | GT1_LPS_heptosyltransferase | 6.0e-5 | 130 | 244 | 115 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 7.0e-23 | 124 | 426 | 308 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005622 | intracellular |
| GO:0006091 | generation of precursor metabolites and energy |
| GO:0008152 | metabolic process |
| GO:0009536 | plastid |
| GO:0009579 | thylakoid |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18065.1 | 0 | 16 | 464 | 19 | 470 | unknown [Glycine max] |
| GenBank | EEC83246.1 | 0 | 6 | 469 | 1 | 462 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 6 | 469 | 1 | 426 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 469 | 1 | 469 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 1 | 468 | 1 | 465 | hypothetical protein LOC100275158 [Zea mays] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO794001 | 289 | 132 | 420 | 0 |
| GO879343 | 290 | 158 | 447 | 0 |
| EC878039 | 272 | 85 | 356 | 0 |
| EE170514 | 272 | 85 | 356 | 0 |
| EE046780 | 269 | 85 | 353 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Malus domestica | MDP0000821000 | ||||
| Panicum virgatum | Pavirv00029492m | Pavirv00049966m | |||
| Ricinus communis | 30131.m006851 | ||||
| Setaria italica | Si013672m | ||||
| Sorghum bicolor | Sb07g016320.2 | Sb07g016320.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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