PlantCAZyme

Basic Information
Species	Oryza sativa
Cazyme ID	LOC_Os08g17390.1
Family	GT9
Protein Properties	Length: 470 Molecular Weight: 51662 Isoelectric Point: 6.9166
Chromosome	Chromosome/Scaffold: 8 Start: 10630309 End: 10634375
Description	NDH-dependent cyclic electron flow 1
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GT9	191	439	3.5e-21
LKNRYYDLIISTKLAGIGHALFLFMSSARDKVGYVYPNVNSAGAGLFLTEMFRPPTTNLADSGYNMYQDMLEWIGRPAKGVPEHPVPPLRVSISKKLRAF VEDKYSRAGVEKGKFVVVHGIASDSFANMRSRGDDDCLLPLEHWAEIAKEISSEDNGLKPLFVIPHQKHREEVEETVGKDTNILFITTPGQLTCLINDSV GVVATNTAAVQLANARDKPCVALFSSKEKARLFLPYLEEKKGCTVVASE

Full Sequence
Protein Sequence Length: 470 Download
MQTPTMSTSM ATPAKLPSPP SLPIARQCCC HLLQLGRRGG AGVARASAKK KNPWLDPFDD 60 GPDDEFDYRG AFSGGKQEED PRPPEDPANP YGFLRFPAGY NPELDSLASK VRRDVRRACC 120 VVSGGVYENV LFFPVVQLLR DRYPGVVVDV VASARGKQVY EMCKNVRYAD VYDPDDDWPE 180 PAEYTHQLGV LKNRYYDLII STKLAGIGHA LFLFMSSARD KVGYVYPNVN SAGAGLFLTE 240 MFRPPTTNLA DSGYNMYQDM LEWIGRPAKG VPEHPVPPLR VSISKKLRAF VEDKYSRAGV 300 EKGKFVVVHG IASDSFANMR SRGDDDCLLP LEHWAEIAKE ISSEDNGLKP LFVIPHQKHR 360 EEVEETVGKD TNILFITTPG QLTCLINDSV GVVATNTAAV QLANARDKPC VALFSSKEKA 420 RLFLPYLEEK KGCTVVASET GKLIDIDVEA VKKAVKEFKA APSVALAQT*

Full Sequence

Protein Sequence Length: 470 Download

MQTPTMSTSM ATPAKLPSPP SLPIARQCCC HLLQLGRRGG AGVARASAKK KNPWLDPFDD    60
GPDDEFDYRG AFSGGKQEED PRPPEDPANP YGFLRFPAGY NPELDSLASK VRRDVRRACC    120
VVSGGVYENV LFFPVVQLLR DRYPGVVVDV VASARGKQVY EMCKNVRYAD VYDPDDDWPE    180
PAEYTHQLGV LKNRYYDLII STKLAGIGHA LFLFMSSARD KVGYVYPNVN SAGAGLFLTE    240
MFRPPTTNLA DSGYNMYQDM LEWIGRPAKG VPEHPVPPLR VSISKKLRAF VEDKYSRAGV    300
EKGKFVVVHG IASDSFANMR SRGDDDCLLP LEHWAEIAKE ISSEDNGLKP LFVIPHQKHR    360
EEVEETVGKD TNILFITTPG QLTCLINDSV GVVATNTAAV QLANARDKPC VALFSSKEKA    420
RLFLPYLEEK KGCTVVASET GKLIDIDVEA VKKAVKEFKA APSVALAQT* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
cd03789	GT1_LPS_heptosyltransferase	0.005	330	431	113	+ Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
TIGR02193	heptsyl_trn_I	0.002	270	414	150	+ lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].
pfam01075	Glyco_transf_9	0.001	191	414	231	+ Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
cd03789	GT1_LPS_heptosyltransferase	6.0e-5	130	244	115	+ Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
COG0859	RfaF	7.0e-23	124	426	308	+ ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]

Gene Ontology
GO Term	Description
GO:0005622	intracellular
GO:0006091	generation of precursor metabolites and energy
GO:0008152	metabolic process
GO:0009536	plastid
GO:0009579	thylakoid

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ACU18065.1	0	16	464	19	470	unknown [Glycine max]
GenBank	EEC83246.1	0	6	469	1	462	hypothetical protein OsI_28562 [Oryza sativa Indica Group]
GenBank	EEE68378.1	0	6	469	1	426	hypothetical protein OsJ_26704 [Oryza sativa Japonica Group]
RefSeq	NP_001061432.1	0	1	469	1	469	Os08g0276100 [Oryza sativa (japonica cultivar-group)]
RefSeq	NP_001142788.1	0	1	468	1	465	hypothetical protein LOC100275158 [Zea mays]

EST Download unfiltered results here

Hit	Length	Start	End	EValue
GO794001	289	132	420	0
GO879343	290	158	447	0
EC878039	272	85	356	0
EE170514	272	85	356	0
EE046780	269	85	353	0

Orthologous Group
Species	ID
Malus domestica	MDP0000821000
Panicum virgatum	Pavirv00029492m	Pavirv00049966m
Ricinus communis	30131.m006851
Setaria italica	Si013672m
Sorghum bicolor	Sb07g016320.2	Sb07g016320.1

CAZyme Information