| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g18970.1 |
| Family | PL1 |
| Protein Properties | Length: 686 Molecular Weight: 75363.6 Isoelectric Point: 9.7963 |
| Chromosome | Chromosome/Scaffold: 8 Start: 11310680 End: 11317860 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 96 | 297 | 0 |
| KVWITFARDMRIRLAQPLYVKNFTTIDGRGADVHVAGGAGIVLYHARDVIVHGLHVHDCRAQPPGRVVVPGGAVQPSGSGDGDAIRLVASSKVWIDHNTL SRCEDGLLDVTVGSTDVTVSNNWFHDHDKVMLLGHDDGFTTDRRMRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNLYDGWRDYAIGGSMGPSVKSQGNLF AA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 686 Download |
| MANRNVPMLL PLAVLFLLGS GGVATAANVI DRCWRGQRNW AADRQRLAVC SVGFAGKMRQ 60 NRGAGVVAYT VTDPSDDPVR PRPGTLRYGA TVLPAKVWIT FARDMRIRLA QPLYVKNFTT 120 IDGRGADVHV AGGAGIVLYH ARDVIVHGLH VHDCRAQPPG RVVVPGGAVQ PSGSGDGDAI 180 RLVASSKVWI DHNTLSRCED GLLDVTVGST DVTVSNNWFH DHDKVMLLGH DDGFTTDRRM 240 RVTVAFNRFG PNVNQRMPRI RHGYAHVVNN LYDGWRDYAI GGSMGPSVKS QGNLFAASGG 300 AGDNKKVTRR MPAVARGGGG GGKDQWHLHS VGDAFENGAF FRQVGNRVRP NYNRHQAFSA 360 ASAGDERVSV TEFGWALRQS LWLPDSPGQK RGLLTLVLRV LPAGINMSSF LKFSLSLISI 420 ALSSCSRWQQ ELGPAYLSTK ALRGSGRGHI WAFYRGRQRR LGPPPPLPAR RRLGPPPPVL 480 VPHTPASAAA ASHPRLRCRC EPRGCSSGRI EGAGAASDRR LRCRRLGPPP PLPLRAARLL 540 VTAGMDRSWI NSRLFSKPHL DGVNEFMKFV LERFDENAEI LCPCRWCLNR IHRQKGHVED 600 HLYIYGIAST YTRWIYHGEQ SDAGINENED HLDEHTSFSE DVGINEDEEE NPPDRIPDMV 660 DELYIAEGQD GGKSMFAAIL DEMKQ* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13963 | Transpos_assoc | 8.0e-25 | 547 | 619 | 75 | + Transposase-associated domain. | ||
| COG3866 | PelB | 7.0e-25 | 119 | 295 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-48 | 119 | 295 | 185 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-60 | 104 | 299 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD01325.1 | 0 | 1 | 367 | 1 | 367 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
| GenBank | EAZ06386.1 | 0 | 1 | 367 | 1 | 367 | hypothetical protein OsI_28615 [Oryza sativa Indica Group] |
| RefSeq | XP_002267384.1 | 0 | 13 | 378 | 5 | 362 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 28 | 363 | 2 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458626.1 | 0 | 12 | 381 | 7 | 369 | hypothetical protein SORBIDRAFT_03g036930 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 28 | 358 | 2 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 28 | 358 | 2 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-18 | 127 | 299 | 77 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-17 | 113 | 296 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2qx3_B | 0.00000000000001 | 110 | 295 | 63 | 246 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
