y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os08g23790.1 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43490.7 Isoelectric Point: 8.6335 |
Chromosome | Chromosome/Scaffold: 8 Start: 14404164 End: 14406706 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 63 | 396 | 0 |
KAACAATGAVTLVLPPGTYYIGPVQFHGPCSKATTMTFLMQGTLKAATDLKRFGNDWVEFGWVNHLIVSGQNGAAFDGQGAASWPFNKCPIRKDCKVLPT SVLFVNNKNMVVQNVASVNSKFFHMALLQCSGAKISGVKISAPESSPNTDGIHIERSNGVSIADTTIATGDDCISIGQGNDNIDVARVHCGPGHGMSVGS LGRYVGEGDVTRIHVRDMTFHGTMNGVRIKTWENSPTKSNAAHMLFENLVMNDVQNPIIIDQKYCPYYNCEHKFVSGVTIKDVQFKNIKGTATTQVAVLL KCGVPCQGVVLQDVDLRYKGNGVSSSKCENVRAK |
Full Sequence |
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Protein Sequence Length: 408 Download |
MEARLRLLVV VVVVAGHCAA VASAAGNSSV VGYHGDPTFN VRNYGAKGNG QTDDSKALMT 60 AWKAACAATG AVTLVLPPGT YYIGPVQFHG PCSKATTMTF LMQGTLKAAT DLKRFGNDWV 120 EFGWVNHLIV SGQNGAAFDG QGAASWPFNK CPIRKDCKVL PTSVLFVNNK NMVVQNVASV 180 NSKFFHMALL QCSGAKISGV KISAPESSPN TDGIHIERSN GVSIADTTIA TGDDCISIGQ 240 GNDNIDVARV HCGPGHGMSV GSLGRYVGEG DVTRIHVRDM TFHGTMNGVR IKTWENSPTK 300 SNAAHMLFEN LVMNDVQNPI IIDQKYCPYY NCEHKFVSGV TIKDVQFKNI KGTATTQVAV 360 LLKCGVPCQG VVLQDVDLRY KGNGVSSSKC ENVRAKYAGF QNPKPCP* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-77 | 38 | 404 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-78 | 39 | 406 | 379 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-79 | 39 | 406 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 74 | 393 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 33 | 407 | 380 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005623 | cell |
GO:0005975 | carbohydrate metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83381.1 | 0 | 172 | 407 | 1 | 236 | hypothetical protein OsI_28796 [Oryza sativa Indica Group] |
GenBank | EEE68484.1 | 0 | 1 | 407 | 1 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
RefSeq | NP_001061556.1 | 0 | 1 | 407 | 1 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437842.1 | 0 | 38 | 406 | 30 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
RefSeq | XP_002444237.1 | 0 | 35 | 407 | 22 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 130 | 345 | 119 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000003 | 93 | 393 | 40 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000003 | 93 | 393 | 40 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000003 | 93 | 393 | 40 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000003 | 93 | 393 | 40 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |