| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g41410.1 |
| Family | CBM43 |
| Protein Properties | Length: 507 Molecular Weight: 53037 Isoelectric Point: 6.7712 |
| Chromosome | Chromosome/Scaffold: 8 Start: 26150369 End: 26153178 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 385 | 467 | 1.3e-25 |
| WCVLAGGGGEAANETAVAAAVEYACRQRSGTCAAIEAGGECNQPDTLAAHASYAFNAYWQLFRKAGGTCYFNGLAEKTTIDPT | |||
| GH17 | 33 | 357 | 0 |
| LGVNYGTVADDLPTAARSVELLRAAGAGAVRIYDANADILRALAGTGVPVSVTVPNDAIPSLAAAASPAAVDEWVARNLAPHIPAARVLCLLVGNEVLSD RATAGTAWPSLVPAMANLRRALSARGLGRVKVGTTLAMDALGTSYPPSAGAFRDDIAGAVVRPLLEFLNATGSYYFVDAYPYFAWAANHRSISLDYALFQ GEASTHYVDPGTGLTYTNLFDQMLDAVVAAMARLGYGNVKLAVSETGWPTAGDADELGANVHNAATYNRNLAARMAKNPGTPARPGAEIPVFLFSLYNEN RKPGPGTERHWGLYYPNATWVYEVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 507 Download |
| MSSSSLAAAA AAAFLLAVAM SCHCHVARGW GGLGVNYGTV ADDLPTAARS VELLRAAGAG 60 AVRIYDANAD ILRALAGTGV PVSVTVPNDA IPSLAAAASP AAVDEWVARN LAPHIPAARV 120 LCLLVGNEVL SDRATAGTAW PSLVPAMANL RRALSARGLG RVKVGTTLAM DALGTSYPPS 180 AGAFRDDIAG AVVRPLLEFL NATGSYYFVD AYPYFAWAAN HRSISLDYAL FQGEASTHYV 240 DPGTGLTYTN LFDQMLDAVV AAMARLGYGN VKLAVSETGW PTAGDADELG ANVHNAATYN 300 RNLAARMAKN PGTPARPGAE IPVFLFSLYN ENRKPGPGTE RHWGLYYPNA TWVYEVDLAG 360 RRPAASYPPL APTPPAPDQD GTPVWCVLAG GGGEAANETA VAAAVEYACR QRSGTCAAIE 420 AGGECNQPDT LAAHASYAFN AYWQLFRKAG GTCYFNGLAE KTTIDPTFAL RSKHAKPFVN 480 LQCDRAVPSL VEFRVSALNC AQKQNV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0006 | 269 | 349 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-8 | 416 | 459 | 53 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-20 | 416 | 469 | 54 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-96 | 33 | 357 | 326 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF24208.2 | 0 | 18 | 467 | 18 | 467 | Os08g0525800 [Oryza sativa Japonica Group] |
| GenBank | EAZ07710.1 | 0 | 18 | 505 | 18 | 505 | hypothetical protein OsI_29967 [Oryza sativa Indica Group] |
| RefSeq | NP_001062294.1 | 0 | 18 | 467 | 18 | 467 | Os08g0525800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002444717.1 | 0 | 12 | 467 | 25 | 473 | hypothetical protein SORBIDRAFT_07g026540 [Sorghum bicolor] |
| RefSeq | XP_002462618.1 | 0 | 33 | 467 | 37 | 470 | hypothetical protein SORBIDRAFT_02g029080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 33 | 358 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 33 | 358 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 33 | 358 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 33 | 359 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 33 | 359 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
