| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g44040.1 |
| Family | PL4 |
| Protein Properties | Length: 607 Molecular Weight: 69225.7 Isoelectric Point: 5.1722 |
| Chromosome | Chromosome/Scaffold: 8 Start: 27724494 End: 27731269 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 123 | 589 | 0 |
| KRFHYMALADDRKRIMPMPEDRVSPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCENQYNNVHGWISFDPPIGFWQITPSDEFRTGGPVKQNLTSHV GPTMLAMFLSGHYAGDDLTPKFMTGEYWKKVHGPVFMYLNSSWDGSNPTLLWKDAKVQMMIEKESWPYYFALSDDFQKTEQRGRISGRLLVRDRYLHDAD LYGTSAYVGLALPGDVGSWQRECKGYQFWCRAHDGGSFSIRNIVAGDYNLYAWVPGFIGDYKLDAKLTISSGDDIYLGDLVYEPPRDGPTMWEIGIPDRS ASEFYVPDPNPNYVNRLYINHPDRFRQYGLWERYAELYPDGDLVYTIGQSDYTTDWFFAQVNRRTDQSTYQPTTWQIKFNLDSVSPNSTYKFRVALASSA NAELQVRFNNQDRTAPHFTTGLIGKDNTIARHGIHALYWLFNIDVSGAWLVQGMNTIYLKQPRNQSP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 607 Download |
| MGHPPATSSP AGATAGVSVM VSDRYVEIKN GIFEVTLSNP DGIVTGVRYN GVDNLMEILN 60 KEDKRGYWDL VWSKLGERTG IFDVIKGTEF RIIYQDENQA EVSFVRTWDP SLEGKAVPLN 120 IDKRFHYMAL ADDRKRIMPM PEDRVSPRGQ QLAYPEAVLL VDPINPDLRG EVDDKYQYSC 180 ENQYNNVHGW ISFDPPIGFW QITPSDEFRT GGPVKQNLTS HVGPTMLAMF LSGHYAGDDL 240 TPKFMTGEYW KKVHGPVFMY LNSSWDGSNP TLLWKDAKVQ MMIEKESWPY YFALSDDFQK 300 TEQRGRISGR LLVRDRYLHD ADLYGTSAYV GLALPGDVGS WQRECKGYQF WCRAHDGGSF 360 SIRNIVAGDY NLYAWVPGFI GDYKLDAKLT ISSGDDIYLG DLVYEPPRDG PTMWEIGIPD 420 RSASEFYVPD PNPNYVNRLY INHPDRFRQY GLWERYAELY PDGDLVYTIG QSDYTTDWFF 480 AQVNRRTDQS TYQPTTWQIK FNLDSVSPNS TYKFRVALAS SANAELQVRF NNQDRTAPHF 540 TTGLIGKDNT IARHGIHALY WLFNIDVSGA WLVQGMNTIY LKQPRNQSPF QGLMYDYLRM 600 EGPSGS* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 3.0e-28 | 303 | 402 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-50 | 21 | 264 | 276 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 4.0e-54 | 414 | 601 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 8.0e-65 | 21 | 172 | 192 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0005575 | cellular_component |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD10227.1 | 0 | 1 | 606 | 1 | 645 | putative MYST1 [Oryza sativa Japonica Group] |
| GenBank | EEC84004.1 | 0 | 5 | 606 | 628 | 1186 | hypothetical protein OsI_30207 [Oryza sativa Indica Group] |
| GenBank | EEE69123.1 | 0 | 1 | 601 | 660 | 1299 | hypothetical protein OsJ_28233 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062464.1 | 0 | 1 | 606 | 14 | 658 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001062465.1 | 0 | 1 | 606 | 1 | 606 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO843500 | 255 | 353 | 607 | 0 |
| GO850736 | 254 | 354 | 607 | 0 |
| JG785405 | 258 | 279 | 534 | 0 |
| GT822654 | 246 | 238 | 483 | 0 |
| GW864372 | 303 | 124 | 426 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
