| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os08g44510.1 |
| Family | GT41 |
| Protein Properties | Length: 928 Molecular Weight: 102548 Isoelectric Point: 5.584 |
| Chromosome | Chromosome/Scaffold: 8 Start: 27991556 End: 27999425 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT41 | 349 | 838 | 0 |
| IKPNFSQSLNNLGVVYTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYEKCLQIDPDSRNAGQNRLLALNYIDEGFDDKLYQAHR EWGKRFLKLYPQYTSWDNPKVADRPLVIGYVSPDYFTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGLWRDIYGIDEKKVASLV REDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQKHVEELVRLPESFLCYSPSPEAGPVCPTPAILNGFITF GSFNNLAKITPKVLQVWAKILCAVPNSRLVVKCKPFCCDSIRQKFLSTLAELGLEPLRVDLLPLIHLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKSENEYVSLALDLAADVTALQELRMSLRGLMAKSPVCDGENFTRGLESAYRNMWRRYCDG | |||
| Full Sequence |
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| Protein Sequence Length: 928 Download |
| MGRPGMDSSE GRESNGVVPE RNGGAVPAKQ QLDGKDTLRY ANILRSRNKF AEALQLYNNV 60 LEKDEANVEA LIGKGICLQA QSLPMQAIEC FNEAVRIDPG NACALTYCGM IYKDEGHLVE 120 AAEAYQKARN ADPSYKPAAE FLAIVLTDLG TSLKLAGNTE EGIQKYCEAL EVDSHYAPAY 180 YNLGVVYSEM MQFDLALTCY EKAALERPLY AEAYCNMGVI YKNRGELEAA IACYERCLTI 240 SPNFEIAKNN MAIALTDLGT KVKIEGDINQ GVAYYKKALF YNWHYADAMY NLGVAYGEML 300 NFEMAIVFYE LALHFNPRCA EACNNLGVIY KDRDNLDKAV ECYQMALSIK PNFSQSLNNL 360 GVVYTVQGKM DAASSMIQKA IFANSTYAEA YNNLGVLYRD AGSITSAVQA YEKCLQIDPD 420 SRNAGQNRLL ALNYIDEGFD DKLYQAHREW GKRFLKLYPQ YTSWDNPKVA DRPLVIGYVS 480 PDYFTHSVSY FIEAPLAHHD YSNYKVVVYS GVVKADAKTL RFKDKVLKKG GLWRDIYGID 540 EKKVASLVRE DKVDILVELT GHTANNKLGT MACRPAPIQV TWIGYPNTTG LPTIDYRITD 600 SLADPPDTTQ KHVEELVRLP ESFLCYSPSP EAGPVCPTPA ILNGFITFGS FNNLAKITPK 660 VLQVWAKILC AVPNSRLVVK CKPFCCDSIR QKFLSTLAEL GLEPLRVDLL PLIHLNHDHM 720 QAYSLMDISL DTFPYAGTTT TCESLYMGVP CVTMAGSVHA HNVGVSLLTK VGLGRLVAKS 780 ENEYVSLALD LAADVTALQE LRMSLRGLMA KSPVCDGENF TRGLESAYRN MWRRYCDGDA 840 PALRRLDLLQ EEPCSNNNKQ DFDDNQVAKL ADLKAQRVDA AVDGDKQSQL TAHAAVVGEV 900 QQAPIMVNGV SSPVSSGKVE ANGHISR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 5.0e-17 | 47 | 420 | 385 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 1.0e-17 | 49 | 421 | 375 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 9.0e-18 | 41 | 432 | 398 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 5.0e-23 | 46 | 433 | 391 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 5.0e-90 | 201 | 835 | 660 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0005737 | cytoplasm |
| GO:0005829 | cytosol |
| GO:0007165 | signal transduction |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84033.1 | 0 | 6 | 927 | 1 | 947 | hypothetical protein OsI_30264 [Oryza sativa Indica Group] |
| GenBank | EEE69149.1 | 0 | 6 | 927 | 1 | 947 | hypothetical protein OsJ_28275 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062501.1 | 0 | 1 | 927 | 1 | 927 | Os08g0559300 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | O82422 | 0 | 6 | 927 | 1 | 944 | SPY_HORVU RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=HvSPY |
| RefSeq | XP_002445679.1 | 0 | 1 | 924 | 1 | 908 | hypothetical protein SORBIDRAFT_07g024110 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 1e-39 | 208 | 624 | 6 | 386 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
| PDB | 4gz6_D | 1e-22 | 646 | 841 | 524 | 715 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
| PDB | 4gz6_D | 7e-16 | 99 | 255 | 6 | 155 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
| PDB | 4gz6_D | 0.00000000000002 | 146 | 293 | 12 | 152 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
| PDB | 4gz6_D | 0.000000002 | 176 | 327 | 8 | 152 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO867600 | 327 | 307 | 633 | 0 |
| GT041789 | 337 | 331 | 667 | 0 |
| GO867600 | 147 | 200 | 344 | 0.0000000000005 |
| GO867600 | 119 | 148 | 264 | 0.0000000000008 |
| GO867600 | 136 | 43 | 176 | 2.8 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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