| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os09g19930.1 |
| Family | AA3 |
| Protein Properties | Length: 586 Molecular Weight: 63750.7 Isoelectric Point: 8.603 |
| Chromosome | Chromosome/Scaffold: 9 Start: 11920507 End: 11926039 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 41 | 570 | 0 |
| SSFPAMRHETYDYIVVGGGTAGCPLAATLSLKYKVLLLERGGSPYGNRNVSYMENFHIGLSNMAPDSASQAFISTDGVINARARVLGGGTCINAGFYSRA SSNFIQEVGWDEDLVNESFPWVEDKIVQWPKIAPWQAALRDGLLQAGVSPFNGYTYDHVSGTKVGGTIFDETGYRHTAADLLAAGDPNNLRVLLHASVNR IVFNSQRGQLKPRATGVQFTDENGGLHQAFLNSNCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKYVGKGMADNPMNSIFIPTKSPPRQS LIETVGITEAGVFIEASSGFGQSPESIHCHHGIMSAEIGQLSTIPPKERSLEKAQKYANTKLNLPKEIFHGGFILEKIDGPLSTGHLALIDTDVKKNPAV TFNYFSHPQDLTRCVYGIKTIERILKTNRFSELSANTDGHSMERVLNMSVQANVNLIPKHTNDTESLEQFCRDTVITIWHYHGGCHVGKVVDQQHRVLGV SGVRVVDGSTFSRSPGTNPQATVMMMGRYF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 586 Download |
| MALSKRMLFI FQAMVCLCSF SLSQGNQQFS LRNLPTLQKA SSFPAMRHET YDYIVVGGGT 60 AGCPLAATLS LKYKVLLLER GGSPYGNRNV SYMENFHIGL SNMAPDSASQ AFISTDGVIN 120 ARARVLGGGT CINAGFYSRA SSNFIQEVGW DEDLVNESFP WVEDKIVQWP KIAPWQAALR 180 DGLLQAGVSP FNGYTYDHVS GTKVGGTIFD ETGYRHTAAD LLAAGDPNNL RVLLHASVNR 240 IVFNSQRGQL KPRATGVQFT DENGGLHQAF LNSNCDSEII VSAGAIGSPQ LLLLSGIGPK 300 NDLRSHKIPV VLHNKYVGKG MADNPMNSIF IPTKSPPRQS LIETVGITEA GVFIEASSGF 360 GQSPESIHCH HGIMSAEIGQ LSTIPPKERS LEKAQKYANT KLNLPKEIFH GGFILEKIDG 420 PLSTGHLALI DTDVKKNPAV TFNYFSHPQD LTRCVYGIKT IERILKTNRF SELSANTDGH 480 SMERVLNMSV QANVNLIPKH TNDTESLEQF CRDTVITIWH YHGGCHVGKV VDQQHRVLGV 540 SGVRVVDGST FSRSPGTNPQ ATVMMMGRYF GVMILRGRLG RAAGV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 4.0e-26 | 52 | 567 | 562 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 2.0e-27 | 421 | 567 | 152 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| TIGR01810 | betA | 2.0e-36 | 52 | 578 | 590 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 3.0e-49 | 44 | 583 | 589 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 4 | 585 | 590 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0005488 | binding |
| GO:0005576 | extracellular region |
| GO:0006629 | lipid metabolic process |
| GO:0007267 | cell-cell signaling |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG29139.1 | 0 | 23 | 585 | 27 | 590 | protein HOTHEAD precursor [Zea mays] |
| GenBank | EAZ08804.1 | 0 | 1 | 585 | 1 | 585 | hypothetical protein OsI_31066 [Oryza sativa Indica Group] |
| RefSeq | NP_001062996.1 | 0 | 1 | 585 | 1 | 585 | Os09g0363900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130910.1 | 0 | 23 | 585 | 28 | 591 | hypothetical protein LOC100192014 [Zea mays] |
| RefSeq | XP_002462276.1 | 0 | 23 | 585 | 26 | 591 | hypothetical protein SORBIDRAFT_02g023010 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3red_L | 0 | 50 | 578 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_K | 0 | 50 | 578 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_J | 0 | 50 | 578 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_I | 0 | 50 | 578 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| PDB | 3red_H | 0 | 50 | 578 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
