| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os09g26800.1 |
| Family | GH28 |
| Protein Properties | Length: 527 Molecular Weight: 57108 Isoelectric Point: 9.7076 |
| Chromosome | Chromosome/Scaffold: 9 Start: 16282795 End: 16287189 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 134 | 488 | 0 |
| VASIAERGGGRLVVPAGRWLTAPFNLTSRMTLFLAAGAEILGVQDERYWPLMSPLPSYGYGREHRGPRYGSLIHGQDLKDVTITGQNGTINGQGQSWWSK FRKKVLNHTRGPLVQLMRSSNITISNITLRDSPFWTLHIYDCKDVTISDTTILAPIVGAPNTDGIDPDSCENVVIKNCYISVGDDGIAIKSGWDQYGIAY GRPSTNIIIHNVTIRSMVSAGVSIGSEMSGGVSNVLVENVHIWDSRRGVRIKTAPGRGAYVSNITYRNITLEHIRVGIVIKTDYNEHPDEGFDPKAVPII ENISYSSIHGHGVRVPVRIQGSAEIPVKNVTFHDMSVGLVDRKNHVFQCSFVQGQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 527 Download |
| MGETGVAVAS SPRAAASSPR AAASSASVAS SPRAGGVGGR HHHRRWGGAA AISPSYRAVL 60 LALWLVGFAL VFLWQSTSVG RARLYTRPPL LPKRAPSAQG MGQWVAAPPV YDLREFGGVG 120 DGRTLNTEAF VAAVASIAER GGGRLVVPAG RWLTAPFNLT SRMTLFLAAG AEILGVQDER 180 YWPLMSPLPS YGYGREHRGP RYGSLIHGQD LKDVTITGQN GTINGQGQSW WSKFRKKVLN 240 HTRGPLVQLM RSSNITISNI TLRDSPFWTL HIYDCKDVTI SDTTILAPIV GAPNTDGIDP 300 DSCENVVIKN CYISVGDDGI AIKSGWDQYG IAYGRPSTNI IIHNVTIRSM VSAGVSIGSE 360 MSGGVSNVLV ENVHIWDSRR GVRIKTAPGR GAYVSNITYR NITLEHIRVG IVIKTDYNEH 420 PDEGFDPKAV PIIENISYSS IHGHGVRVPV RIQGSAEIPV KNVTFHDMSV GLVDRKNHVF 480 QCSFVQGQVI GYVFPVPCKN LDLYNERREL VKQSALQNIS DIDYSF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-24 | 107 | 443 | 354 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-28 | 115 | 498 | 401 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 5.0e-29 | 112 | 470 | 377 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-39 | 229 | 470 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-64 | 53 | 428 | 403 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84640.1 | 0 | 1 | 526 | 1 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
| GenBank | EEE69791.1 | 0 | 101 | 526 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063274.1 | 0 | 1 | 526 | 1 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002277239.1 | 0 | 41 | 526 | 13 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002460269.1 | 0 | 30 | 526 | 27 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.96182e-44 | 112 | 467 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.96182e-44 | 112 | 467 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.96182e-44 | 112 | 467 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.96182e-44 | 112 | 467 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-21 | 152 | 465 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
