| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os09g31270.1 |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 49955.6 Isoelectric Point: 6.9674 |
| Chromosome | Chromosome/Scaffold: 9 Start: 18801144 End: 18803450 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 50 | 381 | 0 |
| VDACAAAGGGRVLLPAPGDYLTATVHLRSRVVLDVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGVTGGGEINGQGGAFVVTPNPQKNIMVSWNAT GDCEGDECRPRLVGFIDSKDVTIHDITLNQPAYWCLHIVRCDNTMIHNVSIYGDFDTPNNDGIDIEDSNNTAITHCHIDTGDDAICPKSTTGPVYNLTAT NCWIRTKSCAIKFGSASFFDFKKLVFDNITIVDSHRGLGMQIRDGGNVSDVVFSNIKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIQFINISS VSENGVFLAGSKHGLLRNLKFKNVDLTYKRWT | |||
| Full Sequence |
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| Protein Sequence Length: 458 Download |
| MASPLLLLLP LAVSSLLLPF AAAARVFSVA DYGAAGDGAR YDTGAIQAAV DACAAAGGGR 60 VLLPAPGDYL TATVHLRSRV VLDVAPGARL LGGTRQADYP PESRRWYVVL AENTTGAGVT 120 GGGEINGQGG AFVVTPNPQK NIMVSWNATG DCEGDECRPR LVGFIDSKDV TIHDITLNQP 180 AYWCLHIVRC DNTMIHNVSI YGDFDTPNND GIDIEDSNNT AITHCHIDTG DDAICPKSTT 240 GPVYNLTATN CWIRTKSCAI KFGSASFFDF KKLVFDNITI VDSHRGLGMQ IRDGGNVSDV 300 VFSNIKMSTR YYHPLWWGRA EPIYITTCPR HPDSKEGTIS DIQFINISSV SENGVFLAGS 360 KHGLLRNLKF KNVDLTYKRW TNYSGGLYDY RPGCQKMVKH RTGGMMLEHI SGLEIDNVRM 420 RWSRGSLKGW DVDPLLFQPS TVDKLSFHDW QSLAVSR* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-9 | 101 | 251 | 151 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-10 | 91 | 304 | 264 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 4.0e-13 | 115 | 378 | 283 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-20 | 93 | 377 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-36 | 60 | 308 | 283 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016020 | membrane |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84787.1 | 0 | 25 | 457 | 25 | 457 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
| GenBank | EEE69946.1 | 0 | 25 | 457 | 25 | 456 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063526.1 | 0 | 25 | 457 | 25 | 452 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148969.1 | 0 | 23 | 456 | 24 | 457 | polygalacturonase [Zea mays] |
| RefSeq | XP_002462564.1 | 0 | 25 | 456 | 31 | 462 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-17 | 25 | 302 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-17 | 25 | 302 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-17 | 25 | 302 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-17 | 25 | 302 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.0000000000006 | 9 | 307 | 139 | 487 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
