| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os10g02770.1 |
| Family | GH16 |
| Protein Properties | Length: 340 Molecular Weight: 38278.3 Isoelectric Point: 7.0028 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1092789 End: 1096966 |
| Description | xyloglucan endotransglucosylase/hydrolase 28 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH16 | 54 | 228 | 4.6e-27 |
| GDSNLALHGDGKRVRISLDERTGAGFASQDAYLHGFFSASIKLPPDYAAGVVVAFYMSNGDVYEKTHDELDFEFLGNIKGREWRVQTNVYGNGSTSVGRE ERYGLWFDPTEDFHRYAILWSHDWIVFYIDETPIREVQRTKSMGVQFPSKPMSLYATIWDGSSWATSGGRYKVNY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 340 Download |
| MAASRCFLLL LLLLLSPLLA SAGEEEEEAV LAMAARLRRP AAASFREGYT QLFGDSNLAL 60 HGDGKRVRIS LDERTGAGFA SQDAYLHGFF SASIKLPPDY AAGVVVAFYM SNGDVYEKTH 120 DELDFEFLGN IKGREWRVQT NVYGNGSTSV GREERYGLWF DPTEDFHRYA ILWSHDWIVF 180 YIDETPIREV QRTKSMGVQF PSKPMSLYAT IWDGSSWATS GGRYKVNYKY APFVAEFSEL 240 MLHGCAMDTL TRAPMCTPDI ANIHNAVAMS GRQRSAMERF RTKYMTYGYC YDRLRYPTPP 300 SECNVGPEAE LFLPTGEARS IDRHGRARRH RRGPADSAF* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd02175 | GH16_lichenase | 5.0e-21 | 75 | 218 | 147 | + lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure. | ||
| cd00413 | Glyco_hydrolase_16 | 2.0e-22 | 54 | 223 | 174 | + glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues. | ||
| PLN03161 | PLN03161 | 1.0e-54 | 53 | 303 | 260 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional | ||
| pfam00722 | Glyco_hydro_16 | 5.0e-67 | 45 | 230 | 186 | + Glycosyl hydrolases family 16. | ||
| cd02176 | GH16_XET | 2.0e-132 | 45 | 303 | 262 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000003 | reproduction |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005618 | cell wall |
| GO:0005623 | cell |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL34939.1 | 0 | 1 | 339 | 1 | 315 | AC079037_12 Putative xyloglucan endo-transglycosylase [Oryza sativa] |
| GenBank | EAY77529.1 | 0 | 1 | 339 | 1 | 315 | hypothetical protein OsI_32570 [Oryza sativa Indica Group] |
| GenBank | EAY89191.1 | 0 | 42 | 339 | 44 | 338 | hypothetical protein OsI_10687 [Oryza sativa Indica Group] |
| RefSeq | NP_001049503.1 | 0 | 42 | 339 | 44 | 338 | Os03g0239000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001064056.1 | 0 | 1 | 339 | 1 | 339 | Os10g0117000 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uwc_B | 0 | 45 | 303 | 19 | 271 | A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 |
| PDB | 2uwc_A | 0 | 45 | 303 | 19 | 271 | A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 |
| PDB | 2uwa_C | 0 | 45 | 303 | 22 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
| PDB | 2uwa_B | 0 | 45 | 303 | 22 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
| PDB | 2uwa_A | 0 | 45 | 303 | 22 | 274 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
