| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os10g21100.1 |
| Family | GH10 |
| Protein Properties | Length: 587 Molecular Weight: 64235.8 Isoelectric Point: 6.0879 |
| Chromosome | Chromosome/Scaffold: 10 Start: 10711396 End: 10715541 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 236 | 498 | 0 |
| PGFPFGNAMTREILDNPAYEQWFASRFTVATFENEMKWYATEGRQGHEDYRVPDAMLALAERHGVRVRGHNVFWDDQSTQMAWVRSLGPDELRAAMDKRL RSVVSRYGGGRVIGWDVVNENLHWSFYDGKLGPDASPAIYHQVGKIDGETPLFMNEFNTVEQPVDMAAMASKYVAKMNQIRSFPGNGGLKLAVGLESHFG ATPNIPFMRATLDTLAQLKLPIWLTEIDVANGTNQAQHLEEVLREGHGHPNVDGMVMWAAWHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 587 Download |
| MKVFMEKLGI ILLLSFRGVK IFWLRHSTKA MFYCGISICV VQCLSNPMIP LYSGGVIKNS 60 EFNVGLTDWT VPLGVQATVN SSSSGNKFAE ARTDGQPSRT VYQTVQIQPN THYSLSAWLQ 120 VSAGTANVMA VVRTPDGQFV AAGATVAKSG CWSMIKGGMT SYSSGQGQLY FEADAAVAIW 180 VDSVSLQPFT FDEWDAHRQQ QSAGRARRST LGVVVARGTD GAPVPNATVT AELLRPGFPF 240 GNAMTREILD NPAYEQWFAS RFTVATFENE MKWYATEGRQ GHEDYRVPDA MLALAERHGV 300 RVRGHNVFWD DQSTQMAWVR SLGPDELRAA MDKRLRSVVS RYGGGRVIGW DVVNENLHWS 360 FYDGKLGPDA SPAIYHQVGK IDGETPLFMN EFNTVEQPVD MAAMASKYVA KMNQIRSFPG 420 NGGLKLAVGL ESHFGATPNI PFMRATLDTL AQLKLPIWLT EIDVANGTNQ AQHLEEVLRE 480 GHGHPNVDGM VMWAAWHATA CYVMCLTDDE FKNLAVGDVV DKLIAEWRTH PVAVATTDAD 540 GVVELDLAHG EYNVTVTHPS LVSSAVRTLT VDASSSSSEN AIDIRV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-31 | 241 | 481 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-41 | 238 | 493 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-66 | 271 | 520 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM08565.1 | 0 | 48 | 586 | 1 | 539 | AC092749_18 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
| DDBJ | BAD06323.1 | 0 | 41 | 586 | 30 | 574 | putative 1,4-beta-xylanase [Triticum aestivum] |
| GenBank | EEC66791.1 | 0 | 43 | 586 | 80 | 607 | hypothetical protein OsI_33190 [Oryza sativa Indica Group] |
| RefSeq | NP_001064414.1 | 0 | 1 | 586 | 1 | 586 | Os10g0351600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001064415.1 | 0 | 41 | 586 | 31 | 578 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 8e-24 | 240 | 493 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyz_B | 9e-22 | 223 | 494 | 19 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 9e-22 | 223 | 494 | 19 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1e0v_A | 1e-20 | 227 | 464 | 3 | 239 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 1e-20 | 227 | 464 | 3 | 239 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FL833802 | 244 | 227 | 470 | 0 |
| FL816029 | 263 | 179 | 441 | 0 |
| FL788487 | 250 | 304 | 553 | 0 |
| EX266128 | 277 | 252 | 527 | 0 |
| FL746832 | 236 | 210 | 445 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
