| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os10g21110.1 |
| Family | GH10 |
| Protein Properties | Length: 579 Molecular Weight: 63921.1 Isoelectric Point: 8.1347 |
| Chromosome | Chromosome/Scaffold: 10 Start: 10727317 End: 10730929 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 230 | 490 | 0 |
| AGFPFGNALTKEILDLPAYEKWFTSRFTVATFENEMKWYSNEWAQNNEDYRVADAMLKLAQKYNIKIRGHNVFWDDQNSQMKWVTPLNLDQLKAAMQKRL KSVVTRYAGKVIHWDVVNENLHFNFFETKLGPNASPMIYNQVGALDKNAILFMNEFNTLEQPGDPNPVPSKYVAKMKQIQSYPGNSALKLGVGLESHFST PNIPYMRSALDTLAQLKLPMWLTEVDVVKGPNQVKFLEQVLREGYAHPSVNGMIMWAAWHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 579 Download |
| MEKVLVLSLI CISLCQGWVV QSLEYDHTAS IECLRDPMKP LYNGGIIQNG EFNSGLMGWS 60 THRDIKAGLS SSPSGNKFAV VQRADSLSGA AVPSRSVYQK IQLQGDTHYS LSAWLQVSAG 120 AAHVKAFVKT PNGERVVAGS VSAQSGCWSM LKGGMTAYSS GPGQIFFESD APVDIWMDSV 180 SLQPFTFDEW DAHRQQSAAK VRRSTVRVVV RGADGAPMAN ATVIVELLRA GFPFGNALTK 240 EILDLPAYEK WFTSRFTVAT FENEMKWYSN EWAQNNEDYR VADAMLKLAQ KYNIKIRGHN 300 VFWDDQNSQM KWVTPLNLDQ LKAAMQKRLK SVVTRYAGKV IHWDVVNENL HFNFFETKLG 360 PNASPMIYNQ VGALDKNAIL FMNEFNTLEQ PGDPNPVPSK YVAKMKQIQS YPGNSALKLG 420 VGLESHFSTP NIPYMRSALD TLAQLKLPMW LTEVDVVKGP NQVKFLEQVL REGYAHPSVN 480 GMIMWAAWHA KGCYVMCLTD NSFKNLPVGT LVDKLIAEWK THKTAATTGA DGAVELDLPH 540 GDYNLTVSHP SLGTNATVRA MTVDAASLAS ERLVNIKV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 2.0e-26 | 229 | 460 | 245 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-40 | 226 | 485 | 279 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-70 | 265 | 512 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005488 | binding |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM08566.1 | 0 | 38 | 578 | 1 | 541 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
| GenBank | EEC66792.1 | 0 | 1 | 578 | 1 | 578 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
| GenBank | EEE50812.1 | 0 | 38 | 578 | 1 | 533 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064415.1 | 0 | 1 | 578 | 1 | 578 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002461545.1 | 0 | 30 | 577 | 8 | 566 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-24 | 234 | 486 | 15 | 269 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 2e-19 | 229 | 469 | 13 | 252 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1ta3_B | 5e-19 | 234 | 472 | 17 | 259 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1xyz_B | 7e-19 | 246 | 486 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 7e-19 | 246 | 486 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
