| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os11g14400.1 |
| Family | GH28 |
| Protein Properties | Length: 348 Molecular Weight: 34940.6 Isoelectric Point: 8.1529 |
| Chromosome | Chromosome/Scaffold: 11 Start: 8084983 End: 8086522 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 65 | 324 | 0 |
| AAAAATVVVPAGGVYLVSRARFAGPCRSGAVAVNMTGATVVAPVPYAGVQLWIVFQDVDGVSVAGGTLDGRGRALWACRRARRPDCPPATRSLTIYRSRN VAVRGLTSRDSAGIHITVQASAGVAIVDTVVSAPGRSPNTDGIHIKQSTGVTVRNAVIGTGDDCVSMVEGSSDVLIEAVTCGPGHGISIGSLGDTPEQVA VRNITVKGAALAGTTNGLRIKTWAKANAGAVAGVSFSGVVMRNVSNPIIVDQNYCPGNAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 348 Download |
| MPRRAHAHAA VAAHLLVSAF VAAAAAAAAT YNVIDYGAVG DDGGVTDSAR AFEAAWAAAC 60 AGDAAAAAAT VVVPAGGVYL VSRARFAGPC RSGAVAVNMT GATVVAPVPY AGVQLWIVFQ 120 DVDGVSVAGG TLDGRGRALW ACRRARRPDC PPATRSLTIY RSRNVAVRGL TSRDSAGIHI 180 TVQASAGVAI VDTVVSAPGR SPNTDGIHIK QSTGVTVRNA VIGTGDDCVS MVEGSSDVLI 240 EAVTCGPGHG ISIGSLGDTP EQVAVRNITV KGAALAGTTN GLRIKTWAKA NAGAVAGVSF 300 SGVVMRNVSN PIIVDQNYCP GNASCPTEAR SPETCDLVAP SPWMPTS* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-51 | 79 | 325 | 255 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-51 | 77 | 320 | 248 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-53 | 76 | 338 | 270 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 4.0e-54 | 31 | 328 | 301 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-55 | 77 | 324 | 249 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA92372.2 | 0 | 1 | 347 | 1 | 347 | Polygalacturonase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC67959.1 | 0 | 178 | 337 | 100 | 259 | hypothetical protein OsI_35700 [Oryza sativa Indica Group] |
| GenBank | EEE51927.1 | 0 | 1 | 337 | 1 | 337 | hypothetical protein OsJ_33540 [Oryza sativa Japonica Group] |
| RefSeq | NP_001067620.1 | 0 | 1 | 318 | 1 | 318 | Os11g0249400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002529091.1 | 0 | 15 | 337 | 12 | 329 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-22 | 130 | 318 | 117 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 6e-18 | 69 | 321 | 24 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-18 | 69 | 321 | 24 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-18 | 69 | 321 | 24 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-18 | 69 | 321 | 24 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
