| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os11g14410.1 |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 39724.1 Isoelectric Point: 8.604 |
| Chromosome | Chromosome/Scaffold: 11 Start: 8090147 End: 8092223 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 382 | 0 |
| DDGERPVMRVPAGTFLVGRAYFRGPCRSAGGVVLAIDGTVVAPPAVGNASWITFHYAHGLAIRGGTLDGNGHAFWACKAAAGRRCPPGTTTLDISQSNNV SVKRVTLVDSKNVHVSIFDCAGVTLQGVRIAAPADSPNTDGIHVALSRDVAVLSATVRTGDDCVSVGPGTSGVAIRNIRCGPGHGISIGSLGGRAGEGEV RNVTVESASLAGTQNGLRIKTWGKPFAGRVSGVRFANVAMRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTGI RLRNINLTYDGGGGKPARSFCKNAGGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MSVITVVVVV GVVLALAAAA SVMAAEYSVV DYGARAGGRA DAAGAFLAAW AAACGDDGER 60 PVMRVPAGTF LVGRAYFRGP CRSAGGVVLA IDGTVVAPPA VGNASWITFH YAHGLAIRGG 120 TLDGNGHAFW ACKAAAGRRC PPGTTTLDIS QSNNVSVKRV TLVDSKNVHV SIFDCAGVTL 180 QGVRIAAPAD SPNTDGIHVA LSRDVAVLSA TVRTGDDCVS VGPGTSGVAI RNIRCGPGHG 240 ISIGSLGGRA GEGEVRNVTV ESASLAGTQN GLRIKTWGKP FAGRVSGVRF ANVAMRDVQN 300 PIVVDQNYCP GNVNCPGQSS GVKISDVEYE GITGTSATAV AVRFDCSGSN PCTGIRLRNI 360 NLTYDGGGGK PARSFCKNAG GSASGVVIPP SCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-70 | 65 | 389 | 335 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-83 | 63 | 392 | 333 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-86 | 65 | 384 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-91 | 65 | 393 | 339 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 9.0e-98 | 65 | 393 | 333 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005623 | cell |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX95166.1 | 0 | 27 | 393 | 27 | 393 | Polygalacturonase (pectinase) [Oryza sativa Japonica Group] |
| GenBank | EEC82569.1 | 0 | 24 | 393 | 25 | 394 | hypothetical protein OsI_27120 [Oryza sativa Indica Group] |
| RefSeq | XP_002529090.1 | 0 | 9 | 393 | 11 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 4 | 393 | 5 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529092.1 | 0 | 4 | 393 | 5 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-27 | 63 | 365 | 42 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-22 | 119 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-22 | 119 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-22 | 119 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-22 | 119 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
