| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os11g30310.1 |
| Family | AA7 |
| Protein Properties | Length: 541 Molecular Weight: 57610.7 Isoelectric Point: 7.4125 |
| Chromosome | Chromosome/Scaffold: 11 Start: 17599930 End: 17601552 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 76 | 533 | 0 |
| TNATVRPACIVAASDASHVQAAVRCGHRSGVRLRVRSGGHDYEGLSYRAVRAETFAVLDLAGLRAVRVRAGDATAWVDSGATLGELYYAVGTANPGFAFP GGACSTVGVGGYLSGGGIGLMMRKFGIGADNVLDAMIVNADGELLDRGRMGEDLFWAIRGGGGESFGVVVSWRLKLSMVPPTVAVFTIAKTAGDGGVGDA AALLAKWETLILQPFLPDLTIRVVLQGRTALFQCLYLGSGGCARLAATMRAYFPELGMTASDCHDLTWLRAMAFISLGAADAPPEGMLRRTNNLGTYVKS KSDYVRRPMGAAAWSALFADHLASNNAGVLILEPHGGVVGAVIPDMATPYPHRAGVLYNIQYGVFWWGDDEGESSAAARRWLDALYAAMEAAVSGNPREA FVNYRDLDIGENAVVGGVTEYESARRWGERYFMGNFRRLAAVKGRVDPGDYFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 541 Download |
| MAATMRGGNV ALAIIFLCFT CSNNVFLLRS SSASSPIDDF LRCLSGKIPA EQVFTQSSSG 60 FMAELTSSVQ NPRFVTNATV RPACIVAASD ASHVQAAVRC GHRSGVRLRV RSGGHDYEGL 120 SYRAVRAETF AVLDLAGLRA VRVRAGDATA WVDSGATLGE LYYAVGTANP GFAFPGGACS 180 TVGVGGYLSG GGIGLMMRKF GIGADNVLDA MIVNADGELL DRGRMGEDLF WAIRGGGGES 240 FGVVVSWRLK LSMVPPTVAV FTIAKTAGDG GVGDAAALLA KWETLILQPF LPDLTIRVVL 300 QGRTALFQCL YLGSGGCARL AATMRAYFPE LGMTASDCHD LTWLRAMAFI SLGAADAPPE 360 GMLRRTNNLG TYVKSKSDYV RRPMGAAAWS ALFADHLASN NAGVLILEPH GGVVGAVIPD 420 MATPYPHRAG VLYNIQYGVF WWGDDEGESS AAARRWLDAL YAAMEAAVSG NPREAFVNYR 480 DLDIGENAVV GGVTEYESAR RWGERYFMGN FRRLAAVKGR VDPGDYFRNE QSIPPLLQPY 540 * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01565 | FAD_binding_4 | 1.0e-9 | 82 | 223 | 143 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| pfam08031 | BBE | 2.0e-15 | 475 | 534 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0003824 | catalytic activity |
| GO:0005488 | binding |
| GO:0005575 | cellular_component |
| GO:0005618 | cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA93766.1 | 0 | 1 | 540 | 1 | 540 | Reticuline oxidase precursor, putative [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAY80999.1 | 0 | 1 | 540 | 1 | 540 | hypothetical protein OsI_36182 [Oryza sativa Indica Group] |
| GenBank | EAZ01289.1 | 0 | 39 | 537 | 34 | 523 | hypothetical protein OsI_23318 [Oryza sativa Indica Group] |
| RefSeq | NP_001067934.1 | 0 | 1 | 500 | 1 | 500 | Os11g0495700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002438541.1 | 0 | 10 | 535 | 7 | 522 | hypothetical protein SORBIDRAFT_10g021685 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 39 | 537 | 12 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 39 | 537 | 12 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 38 | 540 | 9 | 500 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 38 | 540 | 9 | 500 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 38 | 540 | 9 | 500 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
