| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os11g43750.1 |
| Family | GH28 |
| Protein Properties | Length: 450 Molecular Weight: 48351.4 Isoelectric Point: 5.4324 |
| Chromosome | Chromosome/Scaffold: 11 Start: 26420022 End: 26423934 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 65 | 414 | 0 |
| ADKGGAQLYVPKGRWLTGSFNLTSHLTLFLEEEAVIIGTKDPSQWPIVEPLPSYGQGLDLPGPRHRSLINGYNLSDVVITGNNGVIDGQGSVWWDWLHSH ELNHSRPHIVEFLHSEEVVISNLTFLNSPAWSIHPVYCSNVKVHNVTIKTSLDAPLTDGIVPDSCSNVCIEDSSISVGHDAISLKSGWDNYGISFGRPTS DIHISRVDLQASSGAALAIGSEMSGGISDIHVDHIRIGSSSKGISFRTTPGRGGYIAEVVVADVVMDSVHLAIEFTGNWSSHPDDHFDPSFLPVIDQITL KNMEGTNISVAGVLSGIEGDPFSAICLSNLNFSIADLAPSSAWTCSNVHG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MKRRLVVVAL VLLAVVELVH GDGWRWAPGS RPHSVTITEF GAVGDGKTLN TLPFQNAVFY 60 ARSFADKGGA QLYVPKGRWL TGSFNLTSHL TLFLEEEAVI IGTKDPSQWP IVEPLPSYGQ 120 GLDLPGPRHR SLINGYNLSD VVITGNNGVI DGQGSVWWDW LHSHELNHSR PHIVEFLHSE 180 EVVISNLTFL NSPAWSIHPV YCSNVKVHNV TIKTSLDAPL TDGIVPDSCS NVCIEDSSIS 240 VGHDAISLKS GWDNYGISFG RPTSDIHISR VDLQASSGAA LAIGSEMSGG ISDIHVDHIR 300 IGSSSKGISF RTTPGRGGYI AEVVVADVVM DSVHLAIEFT GNWSSHPDDH FDPSFLPVID 360 QITLKNMEGT NISVAGVLSG IEGDPFSAIC LSNLNFSIAD LAPSSAWTCS NVHGYSELVF 420 PKPCSELHDT STNSSICFSL SSYSALAVL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-15 | 29 | 424 | 413 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 5.0e-18 | 33 | 421 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-18 | 126 | 322 | 202 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-24 | 32 | 318 | 297 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 4.0e-44 | 35 | 320 | 308 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005618 | cell wall |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC68574.1 | 0 | 1 | 449 | 1 | 449 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001066993.1 | 0 | 28 | 447 | 3 | 422 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068399.1 | 0 | 1 | 449 | 1 | 449 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130359.1 | 0 | 28 | 446 | 37 | 455 | hypothetical protein LOC100191454 [Zea mays] |
| RefSeq | XP_002451220.1 | 0 | 28 | 447 | 27 | 446 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-38 | 33 | 393 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-38 | 33 | 393 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-38 | 33 | 393 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-38 | 33 | 393 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000006 | 79 | 413 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
