| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os11g45720.1 |
| Family | CE8 |
| Protein Properties | Length: 486 Molecular Weight: 50903.4 Isoelectric Point: 8.5048 |
| Chromosome | Chromosome/Scaffold: 11 Start: 27656251 End: 27658409 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 100 | 389 | 0 |
| GDTTFTTIAAALEKVPEGNTKRVILDLKPGAEFREKLLLNITKPYITFKSDPANPAVIAWNDMAATRGKDGKPVGTVGSTTVAVESDYFMAYGVVFKNDA PLAKPGAEGGQAVALRLFGTKAAIYNCTIDGGQDTLYDHKGLHYIKDSLIMGSVDFIFGFGRSLYEGCTIVSVTKEVSVLTAQQRTKTIEGAIESGFSFK NCSIKGQGQIYLGRAWGDSSRVVYSYTDMSKEVVPIGWDGWNIAKPESSGIYYGEFKCTGPGSDAKKRVGWALDLTADQAKPFIGTHYIY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MDRPNLAVAV VGLLAVVAAT LPAPSWQFFD LFLPAGPSHR SSGGGFGKWV LMNHEEYVEK 60 KSLYAMKAAG DIGGKTIDAS LSAAEEAKVT WVVDPKGTPG DTTFTTIAAA LEKVPEGNTK 120 RVILDLKPGA EFREKLLLNI TKPYITFKSD PANPAVIAWN DMAATRGKDG KPVGTVGSTT 180 VAVESDYFMA YGVVFKNDAP LAKPGAEGGQ AVALRLFGTK AAIYNCTIDG GQDTLYDHKG 240 LHYIKDSLIM GSVDFIFGFG RSLYEGCTIV SVTKEVSVLT AQQRTKTIEG AIESGFSFKN 300 CSIKGQGQIY LGRAWGDSSR VVYSYTDMSK EVVPIGWDGW NIAKPESSGI YYGEFKCTGP 360 GSDAKKRVGW ALDLTADQAK PFIGTHYIYG DSWILPPPDG KSAASTSTAS KSTASAIPRN 420 STAPATATES NSTAPATPSN STAPVTASNS TAPATASSSN PPATKSYSGP PATPSASSTP 480 AKASR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 3.0e-77 | 90 | 396 | 315 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 3.0e-83 | 92 | 396 | 305 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 7.0e-86 | 92 | 394 | 306 | + pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-105 | 76 | 398 | 325 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 9.0e-106 | 90 | 396 | 307 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0005737 | cytoplasm |
| GO:0008150 | biological_process |
| GO:0008152 | metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA95297.2 | 0 | 42 | 463 | 71 | 500 | Pectinesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABA95298.2 | 0 | 42 | 457 | 71 | 482 | Pectinesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAY81792.1 | 0 | 1 | 399 | 1 | 399 | hypothetical protein OsI_36964 [Oryza sativa Indica Group] |
| RefSeq | NP_001068464.1 | 0 | 1 | 485 | 1 | 485 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068465.1 | 0 | 52 | 463 | 1 | 420 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 3e-27 | 100 | 394 | 15 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8e-27 | 92 | 394 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 9e-16 | 103 | 271 | 17 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 9e-16 | 103 | 271 | 17 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 9e-16 | 103 | 271 | 17 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
