| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os12g03480.1 |
| Family | GH51 |
| Protein Properties | Length: 509 Molecular Weight: 56817 Isoelectric Point: 4.7635 |
| Chromosome | Chromosome/Scaffold: 12 Start: 1368900 End: 1375574 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 75 | 390 | 0 |
| GVIWLDQVSLMPSETYKGHGFRKELMYMLLDLKPRFLRFPGGCFVEGNWLKNAFRWKETIGPWEERPGHYGDVWHYWTDDGLGYYELLELAEDLGANPVW VLNIGMSHHDAVNGTMLAPFIKDATDSLEFAKGSDKSTWGSVRATMGHPEPFPLKYVALGNEDCAPFKLIYRENYPKFYNAIKEAYPDIQIISNCDGSSG PLDHPADLYDYHIYENASTVFFKKNEFDRTSRNGPKVFVSEYAVNGEDAGNGSLLASLAEAAFLIGLEKNSDVVQMACYAPLFVNDNDRVWNPDAIVFNS WQQYGTPSYWMQTYFR | |||
| Full Sequence |
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| Protein Sequence Length: 509 Download |
| MNVEEGKAYN LVMHIRSLES VELTASLTCS NGSQNLASNS VRETNLSTWT KIELQLLAQG 60 TCRTSRLELT TRKRGVIWLD QVSLMPSETY KGHGFRKELM YMLLDLKPRF LRFPGGCFVE 120 GNWLKNAFRW KETIGPWEER PGHYGDVWHY WTDDGLGYYE LLELAEDLGA NPVWVLNIGM 180 SHHDAVNGTM LAPFIKDATD SLEFAKGSDK STWGSVRATM GHPEPFPLKY VALGNEDCAP 240 FKLIYRENYP KFYNAIKEAY PDIQIISNCD GSSGPLDHPA DLYDYHIYEN ASTVFFKKNE 300 FDRTSRNGPK VFVSEYAVNG EDAGNGSLLA SLAEAAFLIG LEKNSDVVQM ACYAPLFVND 360 NDRVWNPDAI VFNSWQQYGT PSYWMQTYFR ESSGAMIHPI MISSSYSDLL AASAITWQDA 420 ENTFLRVKIV NFGPNAVNLT ISSSGLQAGV DTAKSTVTVL TSSNLLDENS FSEPNKVVPV 480 ASELPNAAEQ MQVLHFPYSI CSFDLALV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 6.0e-27 | 94 | 503 | 483 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 1.0e-28 | 339 | 497 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 1.0e-42 | 314 | 499 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005576 | extracellular region |
| GO:0005618 | cell wall |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0008152 | metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96373.1 | 0 | 1 | 508 | 1 | 508 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC67602.1 | 0 | 1 | 507 | 113 | 618 | hypothetical protein OsI_34972 [Oryza sativa Indica Group] |
| RefSeq | NP_001065660.1 | 0 | 1 | 507 | 145 | 649 | Os11g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001065664.1 | 0 | 1 | 507 | 142 | 647 | Os11g0132600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066063.1 | 0 | 1 | 508 | 64 | 571 | Os12g0128800 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 5e-20 | 93 | 507 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 5e-20 | 93 | 507 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 5e-20 | 93 | 507 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 5e-20 | 93 | 507 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 5e-20 | 93 | 507 | 47 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO852683 | 418 | 94 | 508 | 0 |
| GT046204 | 350 | 79 | 428 | 0 |
| GT048615 | 350 | 139 | 487 | 0 |
| DR822775 | 294 | 73 | 366 | 0 |
| JG860201 | 286 | 31 | 316 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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