| Basic Information | |
|---|---|
| Species | Oryza sativa |
| Cazyme ID | LOC_Os12g36810.1 |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 48891.2 Isoelectric Point: 5.6168 |
| Chromosome | Chromosome/Scaffold: 12 Start: 22572806 End: 22576289 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 421 | 0 |
| ADKGGAQLYVPRGRWLTGSFNLTSHLTIFLEKDAVIIGAKEVSEWPIVEPLPSYGQGIDLPGARHRSLINGHNVTDVVITGNNGIIDGQGLTWWNWFRSN KLNYSRPHLVEFVDSEDIVISNLTLLNSPAWGIHPVFCSNVMVHDVTIRTSLDAPLTDGIVPDSCSNMCIEDSSISVAHDAISLKSGWDNYGITIGRPAS DIHISRVDLQASLGAALAFGSEMSGGISDIHVDHLNIHGSSRGILFKTAPGRGGYIRDVVISDVQMEDVNVAIKFTGDWSTHPDNHFDPSALPMINRITL KNMVGTNISVAGVLSGINGDPFTNICLSNISFSLADSTQSSSWSCSNIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| MAGLVVLVVA MAAVAVAVGV ASGEEEAAAA RCARRPRPRP HSVTISEFGA VGDGVTVNTL 60 PFQNAIFYLR SFADKGGAQL YVPRGRWLTG SFNLTSHLTI FLEKDAVIIG AKEVSEWPIV 120 EPLPSYGQGI DLPGARHRSL INGHNVTDVV ITGNNGIIDG QGLTWWNWFR SNKLNYSRPH 180 LVEFVDSEDI VISNLTLLNS PAWGIHPVFC SNVMVHDVTI RTSLDAPLTD GIVPDSCSNM 240 CIEDSSISVA HDAISLKSGW DNYGITIGRP ASDIHISRVD LQASLGAALA FGSEMSGGIS 300 DIHVDHLNIH GSSRGILFKT APGRGGYIRD VVISDVQMED VNVAIKFTGD WSTHPDNHFD 360 PSALPMINRI TLKNMVGTNI SVAGVLSGIN GDPFTNICLS NISFSLADST QSSSWSCSNI 420 SGYSELVFPE PCPDLHHSSS NSSICFSLLT YHALAAA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-20 | 41 | 433 | 416 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-21 | 41 | 429 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-24 | 141 | 420 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-25 | 40 | 403 | 374 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 1.0e-45 | 43 | 392 | 375 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005618 | cell wall |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016787 | hydrolase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA99544.2 | 0 | 24 | 457 | 24 | 457 | glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC68574.1 | 0 | 36 | 455 | 28 | 447 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001066993.1 | 0 | 34 | 457 | 1 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068399.1 | 0 | 36 | 455 | 28 | 447 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148987.1 | 0 | 1 | 452 | 1 | 451 | polygalacturonase [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-35 | 33 | 401 | 18 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-35 | 33 | 401 | 18 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-35 | 33 | 401 | 18 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-35 | 33 | 401 | 18 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-16 | 87 | 421 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
