Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10000129 |
Family | PL4 |
Protein Properties | Length: 273 Molecular Weight: 30776.9 Isoelectric Point: 5.3784 |
Chromosome | Chromosome/Scaffold: 8354185 Start: 32 End: 1993 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 7 | 271 | 0 |
SKYWDLVWSKEGSTGTKGTQERISGTEFSVIVENEGQVEVSFARTWDPSLEGQLPSLNIDKRFILLRNSSGFYSYAIFEHLPEWTPFHLPQVRIVFKLNK DKFHYMAVGDSRQRFMPLPDDRLPERCKELDFPEAVLLVNPVEPQFQGEVDDKYQYSCENKDLKVHGWISSDPAVGFWQITPSNEFRSGGLVKQNLTSHC GPINLAMFLSAHYAGDDMVLKLKPGEGWKKVLGPVFMYLNTVAADDHGGGKIDPLLSLWEDAKQQ |
Full Sequence |
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Protein Sequence Length: 273 Download |
MASPTCSKYW DLVWSKEGST GTKGTQERIS GTEFSVIVEN EGQVEVSFAR TWDPSLEGQL 60 PSLNIDKRFI LLRNSSGFYS YAIFEHLPEW TPFHLPQVRI VFKLNKDKFH YMAVGDSRQR 120 FMPLPDDRLP ERCKELDFPE AVLLVNPVEP QFQGEVDDKY QYSCENKDLK VHGWISSDPA 180 VGFWQITPSN EFRSGGLVKQ NLTSHCGPIN LAMFLSAHYA GDDMVLKLKP GEGWKKVLGP 240 VFMYLNTVAA DDHGGGKIDP LLSLWEDAKQ QG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10320 | RGL4_N | 5.0e-70 | 2 | 252 | 254 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-72 | 9 | 156 | 148 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 5 | 271 | 36 | 292 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 9 | 271 | 40 | 292 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 5 | 271 | 52 | 311 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 9 | 271 | 56 | 311 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 9 | 271 | 56 | 311 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 268 | 5 | 271 | 0 |
FC896579 | 250 | 22 | 271 | 0 |
DY286978 | 250 | 22 | 271 | 0 |
FR618160 | 240 | 32 | 271 | 0 |
DT552229 | 260 | 9 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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