PlantCAZyme

Basic Information
Species	Linum usitatissimum
Cazyme ID	Lus10000271
Family	GH35
Protein Properties	Length: 837 Molecular Weight: 91018.5 Isoelectric Point: 7.746
Chromosome	Chromosome/Scaffold: 8385757 Start: 1248 End: 5888
Description	beta-galactosidase 8
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH35	41	276	0
LVIDGKRRMLISGSIHYPRSTPDMWPDLIQKSKDGGVDVIETYVFWNIHEPVQNQAMAEAGLYVHLRIGPYVCAEWNYGGFPLWLHFIPGIKLRTDNEPY KTEMKRFTAKIVDMMKKEKLYASQGGPIILSQIENEYGNVDAAYGSAAKPYINWAANMAESLNTGVPWVMCQQGDAPDPIINTCNGFYCDQFTPNSKNKP KMWTENWSGWFLSFGGAVPYRPVEDLAFSVARFFHT

Full Sequence
Protein Sequence Length: 837 Download
MKRSSGGRRR EIVVAVGVLL GLALAVATAF GANVSYDHRA LVIDGKRRML ISGSIHYPRS 60 TPDMWPDLIQ KSKDGGVDVI ETYVFWNIHE PVQNQAMAEA GLYVHLRIGP YVCAEWNYGG 120 FPLWLHFIPG IKLRTDNEPY KTEMKRFTAK IVDMMKKEKL YASQGGPIIL SQIENEYGNV 180 DAAYGSAAKP YINWAANMAE SLNTGVPWVM CQQGDAPDPI INTCNGFYCD QFTPNSKNKP 240 KMWTENWSGW FLSFGGAVPY RPVEDLAFSV ARFFHTMVGL TLEGVPVDPL SPLVMIMMPP 300 LTNMVRPVVL QWRFTDKANS QAMNYFRDLH LTQYVHLFTL IAGLLRQPKW GHLKDLHKAL 360 KLSQDALLAT DPATTSLGST VEATAYKSGS LCAAFLANTG KTDRTVSFWN NSYLLPAWSV 420 SILPDCKTVA FNTAKINTVT VVPSFTRTSI NDVSSEWSWI DEPVGITKDS AFTKPGLQEQ 480 INTTADQSDY LWYSLSINSE GGDGSQIHLE SLGHAIHTFV NGKLAGTATG DSNNAKISQD 540 IAVTLVPGKN TIDLLSLTVG LQNYGAFFDL KGAGVTGPVV LKLKNGSTID VSAQMWTYQI 600 GLKGEDSGLP SGTSSQWVSQ SSLPTMKPLL WYKGEAWVNG QSIGRYWPTN IAPPSGCTDS 660 CDYRGSYGAN KCLKNCGKPS QTLYHVPRSW LKSSGNTLVL FEENGGDPTK IAFAAATNKV 720 GSVCAQVSET HPSPVDNWRL NSDTETESGP VLSLFCSHPN QVISSIKFAS YGTPQGTCGS 780 FRNGDCHSKN TLSIIEKACI GSKSCSVEVS GGTFGEPCGR VRKSLAVEAS CTAAAH* 840

Full Sequence

Protein Sequence Length: 837 Download

MKRSSGGRRR EIVVAVGVLL GLALAVATAF GANVSYDHRA LVIDGKRRML ISGSIHYPRS    60
TPDMWPDLIQ KSKDGGVDVI ETYVFWNIHE PVQNQAMAEA GLYVHLRIGP YVCAEWNYGG    120
FPLWLHFIPG IKLRTDNEPY KTEMKRFTAK IVDMMKKEKL YASQGGPIIL SQIENEYGNV    180
DAAYGSAAKP YINWAANMAE SLNTGVPWVM CQQGDAPDPI INTCNGFYCD QFTPNSKNKP    240
KMWTENWSGW FLSFGGAVPY RPVEDLAFSV ARFFHTMVGL TLEGVPVDPL SPLVMIMMPP    300
LTNMVRPVVL QWRFTDKANS QAMNYFRDLH LTQYVHLFTL IAGLLRQPKW GHLKDLHKAL    360
KLSQDALLAT DPATTSLGST VEATAYKSGS LCAAFLANTG KTDRTVSFWN NSYLLPAWSV    420
SILPDCKTVA FNTAKINTVT VVPSFTRTSI NDVSSEWSWI DEPVGITKDS AFTKPGLQEQ    480
INTTADQSDY LWYSLSINSE GGDGSQIHLE SLGHAIHTFV NGKLAGTATG DSNNAKISQD    540
IAVTLVPGKN TIDLLSLTVG LQNYGAFFDL KGAGVTGPVV LKLKNGSTID VSAQMWTYQI    600
GLKGEDSGLP SGTSSQWVSQ SSLPTMKPLL WYKGEAWVNG QSIGRYWPTN IAPPSGCTDS    660
CDYRGSYGAN KCLKNCGKPS QTLYHVPRSW LKSSGNTLVL FEENGGDPTK IAFAAATNKV    720
GSVCAQVSET HPSPVDNWRL NSDTETESGP VLSLFCSHPN QVISSIKFAS YGTPQGTCGS    780
FRNGDCHSKN TLSIIEKACI GSKSCSVEVS GGTFGEPCGR VRKSLAVEAS CTAAAH*       840

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG1874	LacA	5.0e-17	35	179	168	+ Beta-galactosidase [Carbohydrate transport and metabolism]
pfam02140	Gal_Lectin	2.0e-25	754	831	81	+ Galactose binding lectin domain.
pfam01301	Glyco_hydro_35	7.0e-120	40	360	353	+ Glycosyl hydrolases family 35.
PLN03059	PLN03059	0	35	832	849	+ beta-galactosidase; Provisional

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005529	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah]
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
DDBJ	BAD91083.1	0	29	831	17	841	beta-D-galactosidase [Pyrus pyrifolia]
EMBL	CAC44501.1	0	29	831	25	839	beta-galactosidase [Fragaria x ananassa]
EMBL	CBI16297.1	0	16	832	7	846	unnamed protein product [Vitis vinifera]
RefSeq	XP_002314274.1	0	14	831	15	848	predicted protein [Populus trichocarpa]
RefSeq	XP_002530296.1	0	9	832	3	842	beta-galactosidase, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	3d3a_A	5e-29	41	282	15	276	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron
PDB	3d3a_A	0.001	503	705	395	575	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron
PDB	3thd_D	3e-23	24	182	1	171	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron
PDB	3thd_C	3e-23	24	182	1	171	A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron

EST Download unfiltered results here

Hit	Length	Start	End	EValue
HO778160	740	35	717	0
HO795552	535	110	633	0
HO795552	68	35	102	0
DW076707	338	35	358	0
DY971087	257	35	277	0

Orthologous Group
Species	ID
Brassica rapa	Bra003128	Bra003353	Bra021198
Linum usitatissimum	Lus10011237	Lus10036109
Malus domestica	MDP0000127542.34.225	MDP0000127542.34.225
Panicum virgatum	Pavirv00000761m

CAZyme Information