Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10000278 |
Family | CBM43 |
Protein Properties | Length: 353 Molecular Weight: 36190.9 Isoelectric Point: 4.5082 |
Chromosome | Chromosome/Scaffold: 1877 Start: 5410 End: 6562 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 266 | 344 | 4.3e-31 |
WCVAKPSVPDPIMQEAMNYACGSGADCESLQSSGPCFQPDTVYAHASYAFNSYWQRTKGAGGSCSFGGTAILVTVDPSQ |
Full Sequence |
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Protein Sequence Length: 353 Download |
MRRSCNVVPR RLLLLYFTFA AVSLCSVSSG RGLAGEKGGK LRSTTRFDIA SLILQRETMA 60 NAEEASNTAP YVASPFSLTP YDTLSPQNSP ADCLNPPQQG LPQPLPPPSS SSSSGGSGSD 120 FPTPSSPTIL PPPGALAPIL PGPATPGIDV PGPPPSDAFP GPPTTVLSPP SDVFPGPPST 180 VPSPPIDVLP GPPSFVPSPP SEVLPGPPSF VPSPPAYVNP VPNPPEAESP PTFQGPSPPM 240 AFLPPIVYPP PTGPPRPKTG PPAALWCVAK PSVPDPIMQE AMNYACGSGA DCESLQSSGP 300 CFQPDTVYAH ASYAFNSYWQ RTKGAGGSCS FGGTAILVTV DPSQYNYSIT ST* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-22 | 265 | 336 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-35 | 265 | 346 | 82 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD30228.1 | 5.60519e-45 | 210 | 351 | 205 | 352 | AC007202_10 T8K14.10 [Arabidopsis thaliana] |
RefSeq | NP_178066.2 | 2.00386e-43 | 210 | 343 | 249 | 388 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002264966.1 | 4.2039e-45 | 1 | 343 | 1 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312230.1 | 0 | 64 | 344 | 2 | 293 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 2.94273e-44 | 179 | 343 | 79 | 254 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 6e-16 | 263 | 343 | 10 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |