Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10000684 |
Family | PL4 |
Protein Properties | Length: 699 Molecular Weight: 79744.4 Isoelectric Point: 7.9417 |
Chromosome | Chromosome/Scaffold: 1683 Start: 41549 End: 46192 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 6 | 679 | 0 |
VRLHNQDHHVVMDNGIVQVTLSNPAGIITGIRYGGIDNLLEVLNRETNRGYWDLHWHPPGGSGIFDVISGTHFSVVVQTEEQVEISFTRMWEPSLEGKAI PLNIDKRFILLRGSSGFYSYAIYEHITEWPPFEIGETRLTFKLRKDRFQYMAMADNRKRIMPFPEDRMSGKCQQLAFPEAVLLTNPRDPNLKGEVDDKYQ YSCDNKDNRVHGWISFQPAVGFWKITPSDEFRTGGPFKQNLTSHVGPTTLAMFHSTHYAGKDLMLKVATGEHWKKVFGPVFIYLNSVPNGSDPMFLWEDA KRQMMTEVQSWPYSFPASVDFQKPYERGNVYGRLLVLDRYILMSRFLLRTLVKLAKDFAIIMTRYMSKEYMLARGAYVGLALPGDAGSWQKECKGYQFWT TTDHNGCFLIRNVRTGNYNLYATVYGFIGDYRCDAAITINPGCTVEMGDIVYEPPRDGPTLWEIGIPDRSAAQFFVPDPDPQFINRIISFPDRERQLIDD YNSLTDFFPDWSFLQYAKTMFPPMLFTYRVLGLLAGLGSTDCGIDMQRCILALTWFMTLIAVTAAKIGSLLRKLPDGTHVGTTWEIKFRLDRVDRGGTYK LRVALASATLAELQVRVNDPNSSRPLFTTGLIGRDNSIARHGCHGLYWLYNVNVAGDKLVQGENRLFFKQPRCN |
Full Sequence |
---|
Protein Sequence Length: 699 Download |
MFHQPVRLHN QDHHVVMDNG IVQVTLSNPA GIITGIRYGG IDNLLEVLNR ETNRGYWDLH 60 WHPPGGSGIF DVISGTHFSV VVQTEEQVEI SFTRMWEPSL EGKAIPLNID KRFILLRGSS 120 GFYSYAIYEH ITEWPPFEIG ETRLTFKLRK DRFQYMAMAD NRKRIMPFPE DRMSGKCQQL 180 AFPEAVLLTN PRDPNLKGEV DDKYQYSCDN KDNRVHGWIS FQPAVGFWKI TPSDEFRTGG 240 PFKQNLTSHV GPTTLAMFHS THYAGKDLML KVATGEHWKK VFGPVFIYLN SVPNGSDPMF 300 LWEDAKRQMM TEVQSWPYSF PASVDFQKPY ERGNVYGRLL VLDRYILMSR FLLRTLVKLA 360 KDFAIIMTRY MSKEYMLARG AYVGLALPGD AGSWQKECKG YQFWTTTDHN GCFLIRNVRT 420 GNYNLYATVY GFIGDYRCDA AITINPGCTV EMGDIVYEPP RDGPTLWEIG IPDRSAAQFF 480 VPDPDPQFIN RIISFPDRER QLIDDYNSLT DFFPDWSFLQ YAKTMFPPML FTYRVLGLLA 540 GLGSTDCGID MQRCILALTW FMTLIAVTAA KIGSLLRKLP DGTHVGTTWE IKFRLDRVDR 600 GGTYKLRVAL ASATLAELQV RVNDPNSSRP LFTTGLIGRD NSIARHGCHG LYWLYNVNVA 660 GDKLVQGENR LFFKQPRCNS PFIGLLYDYI RLEAPPSS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-24 | 331 | 455 | 125 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-32 | 467 | 693 | 229 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-77 | 6 | 299 | 300 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 7.0e-97 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 6 | 697 | 6 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172462.2 | 0 | 1 | 697 | 44 | 675 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 17 | 697 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 17 | 696 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 695 | 1 | 631 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GW864372 | 336 | 144 | 479 | 0 |
GO266963 | 263 | 1 | 263 | 0 |
DW479599 | 295 | 1 | 292 | 0 |
DW479600 | 298 | 1 | 295 | 0 |
DY293973 | 353 | 6 | 352 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|