y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10000935 |
Family | CE8 |
Protein Properties | Length: 377 Molecular Weight: 42562.9 Isoelectric Point: 8.1017 |
Chromosome | Chromosome/Scaffold: 1098 Start: 7878 End: 9619 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 88 | 354 | 0 |
VVVDQSGHGDYTKIQAAIDSVPQNNQHWVCIQIKAGTYKEKITITGDKPYIILNGQGMTSTKIEWDDHDSTLQSPTFMSQPDNIVVRDIGIVNSYNYPDG RRNRILPAAAALVNGDKTAFYRCGFFGVQDTLWDNEGRHYFKDCHIEGAVDFIFGRGQSIYENCDIRAIGGGFITAHSREAPDDPSGFVFKGCSISGSGP AYLGRPWRQYARVLFYKCKLSDIVEPGGWNPWNGDMGKTTFSEYANYGPGADISKRVAFEKLHLPVE |
Full Sequence |
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Protein Sequence Length: 377 Download |
MAISTTNFHL LVWVLLTSTS TLFFGTRSQL DRWSNDNNNY YYKLMSWTRP ATSTVTFPYT 60 PSRVQPSYYR DSLAINKARS TRSPYRVVVV DQSGHGDYTK IQAAIDSVPQ NNQHWVCIQI 120 KAGTYKEKIT ITGDKPYIIL NGQGMTSTKI EWDDHDSTLQ SPTFMSQPDN IVVRDIGIVN 180 SYNYPDGRRN RILPAAAALV NGDKTAFYRC GFFGVQDTLW DNEGRHYFKD CHIEGAVDFI 240 FGRGQSIYEN CDIRAIGGGF ITAHSREAPD DPSGFVFKGC SISGSGPAYL GRPWRQYARV 300 LFYKCKLSDI VEPGGWNPWN GDMGKTTFSE YANYGPGADI SKRVAFEKLH LPVEMWIEMT 360 SLSYINKDGW LQQQPI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 8.0e-76 | 88 | 344 | 277 | + Pectinesterase. | ||
PLN02665 | PLN02665 | 9.0e-79 | 86 | 371 | 295 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-82 | 82 | 348 | 271 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 7.0e-87 | 86 | 376 | 301 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 4.0e-143 | 86 | 376 | 301 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 55 | 375 | 5 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 88 | 376 | 34 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 85 | 375 | 29 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 88 | 376 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 78 | 376 | 38 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.60519e-45 | 80 | 372 | 3 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99965e-42 | 89 | 372 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 9e-18 | 85 | 294 | 31 | 269 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 7e-17 | 85 | 342 | 4 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 7e-17 | 85 | 342 | 4 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |