Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10001200 |
Family | GH3 |
Protein Properties | Length: 1426 Molecular Weight: 159133 Isoelectric Point: 6.3864 |
Chromosome | Chromosome/Scaffold: 728 Start: 17820 End: 25659 |
Description | alpha-glucan phosphorylase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 86 | 321 | 0 |
LESRLGIPIIYGVDAVHGNNCVYGATVFPHNVGLGATRDADLVKRIGSATALEVRASGIQYTFAPCIAVDKDPRWGRCYESYSEDTNIVRNMTSIITGLQ GEPPEGHPLGYPYVAGRNNVVACAKHFVGDGGTHKGLNEGNTICSYEDLERIHMAPYLDCISQGVATIMASYSSWNGRKLHTDRFLLTEVLKDKLGFKGF VISDWEGLNRLSQPRGSNYRHCVASAVNAGIDMVMV | |||
GT35 | 698 | 1420 | 0 |
ALKKLGHQLEDIMEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQRITKEGQEETAEDWLEKFSPWEVVRHDVVYPVRFFGEVQINA DGTRKWAGGEVVQALAYDVPIPGYKTKNTISLRLWEAKASSSNFDLYQFNEGNYESAAKHHSQAEQICAVLYPGDATESGKLLRLKQQFFLCSASLQDTM QRFKERRKGSKSWKWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEKLGWEEAWDVTSGTIAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFM GMVRDKVPKLEKILPSLRVLDTNAEKPVVRMANLCVVSAHTVNGVAELHSDILKKELFADYLTIWPNKFQNKTNGITPRRWLSFCNPELSSIITKWLKTD KWVTDLDQLSGLRKFADDVILQGEWAAAKMASKKRLAEYVLKVTGVSIDPNSLFDIQIKRIHEYKRQLLNILAAVYRYKKLKEMSAEQRKTSTPRTIMIG GKAFATYTNAKRIVKLVYDVGDVVNSDPEVNEYLKVVFIPNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFSLNGCVIIGTLDGANVEIREEIGED NFFLFGATADQVPQLRKDRENGKFKPDPRFEEAKQYIKSGAFGKYDYSQLLDSLEGNSGFGRGDYFLVGHDFPSYLDAQERVDKSYMDRKKWLRMSIMNT AGSGKFSSDRTISQYAKEIWNVE |
Full Sequence |
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Protein Sequence Length: 1426 Download |
MSTAGGCLYK DPNEPVEVRV KDLLSRMTLQ EKLAQMIQLD RVVADAHYLR DLAVGSVLST 60 GGSAPFENAL TSDWADMVDW FQKLALESRL GIPIIYGVDA VHGNNCVYGA TVFPHNVGLG 120 ATRDADLVKR IGSATALEVR ASGIQYTFAP CIAVDKDPRW GRCYESYSED TNIVRNMTSI 180 ITGLQGEPPE GHPLGYPYVA GRNNVVACAK HFVGDGGTHK GLNEGNTICS YEDLERIHMA 240 PYLDCISQGV ATIMASYSSW NGRKLHTDRF LLTEVLKDKL GFKGFVISDW EGLNRLSQPR 300 GSNYRHCVAS AVNAGIDMVM VGRKYEQFVD DIFSLAKSGE ISTARIDDAV ERILRVKFIA 360 GLFEHPFADR SLLEIVGCKL HRDLAQEAVR KSLVLLKNGK DSNKPLLPLD KNARKILVAG 420 THADNLGYQC GGWTIAWYGL GGRITIGTTI LDAVRKAVGE NTEVIFEEYP SPETLARKDF 480 SYAIVAVGEP PYAEFTGDDP ELVIQNEGRE IVSLVADRIP TLAILVSGRP LVLEPHLLEK 540 IEALVAAWLP GTEGDGIADV IFGGEDFKGQ LPVTWFKKVD QLPMKFDGGI NNVYDPLFPL 600 GVNPGGVPSN IPAAAFPSSD SPSEIASNVN YHAQYSPHFS PFKFDSEQAY FATAESIRDR 660 LLQQWNATYL HFHNVDPKQT ALTNAIGNLN VQNAYAEALK KLGHQLEDIM EQEKDAALGN 720 GGLGRLASCF LDSMATLNLP AWGYGLRYRY GLFKQRITKE GQEETAEDWL EKFSPWEVVR 780 HDVVYPVRFF GEVQINADGT RKWAGGEVVQ ALAYDVPIPG YKTKNTISLR LWEAKASSSN 840 FDLYQFNEGN YESAAKHHSQ AEQICAVLYP GDATESGKLL RLKQQFFLCS ASLQDTMQRF 900 KERRKGSKSW KWSEFPSKVA VQLNDTHPTL AIPELMRLLM DEEKLGWEEA WDVTSGTIAY 960 TNHTVLPEAL EKWSQAVMWK LLPRHMEIIE EIDKRFMGMV RDKVPKLEKI LPSLRVLDTN 1020 AEKPVVRMAN LCVVSAHTVN GVAELHSDIL KKELFADYLT IWPNKFQNKT NGITPRRWLS 1080 FCNPELSSII TKWLKTDKWV TDLDQLSGLR KFADDVILQG EWAAAKMASK KRLAEYVLKV 1140 TGVSIDPNSL FDIQIKRIHE YKRQLLNILA AVYRYKKLKE MSAEQRKTST PRTIMIGGKA 1200 FATYTNAKRI VKLVYDVGDV VNSDPEVNEY LKVVFIPNYN VSVAEVLIPG SELSQHISTA 1260 GMEASGTSNM KFSLNGCVII GTLDGANVEI REEIGEDNFF LFGATADQVP QLRKDRENGK 1320 FKPDPRFEEA KQYIKSGAFG KYDYSQLLDS LEGNSGFGRG DYFLVGHDFP SYLDAQERVD 1380 KSYMDRKKWL RMSIMNTAGS GKFSSDRTIS QYAKEIWNVE GCRVP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 626 | 1419 | 813 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
TIGR02093 | P_ylase | 0 | 629 | 1419 | 810 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
pfam00343 | Phosphorylase | 0 | 698 | 1420 | 728 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
PRK14985 | PRK14985 | 0 | 682 | 1417 | 742 | + maltodextrin phosphorylase; Provisional | ||
PRK14986 | PRK14986 | 0 | 652 | 1424 | 789 | + glycogen phosphorylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM29154.1 | 0 | 601 | 1424 | 8 | 839 | starch phosphorylase type H [Citrus hybrid cultivar] |
DDBJ | BAG31926.1 | 0 | 609 | 1425 | 16 | 843 | alpha-1,4-glucan phosphorylase H isozyme [Cucurbita maxima] |
RefSeq | XP_002280732.1 | 0 | 606 | 1425 | 14 | 843 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313399.1 | 0 | 609 | 1425 | 26 | 853 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520435.1 | 0 | 609 | 1425 | 22 | 849 | glycogen phosphorylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 8 | 601 | 4 | 594 | B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex With A Specific Protein Inhibitor |
PDB | 1x38_A | 0 | 8 | 601 | 4 | 594 | B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex With A Specific Protein Inhibitor |
PDB | 1lq2_A | 0 | 8 | 601 | 4 | 594 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 8 | 601 | 4 | 594 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 8 | 601 | 4 | 594 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO782200 | 412 | 754 | 1165 | 0 |
HO418036 | 538 | 824 | 1340 | 0 |
HO586252 | 552 | 872 | 1422 | 0 |
HO613954 | 500 | 977 | 1426 | 0 |
GT043461 | 330 | 1044 | 1373 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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