Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10001516 |
Family | CBM43 |
Protein Properties | Length: 414 Molecular Weight: 41173 Isoelectric Point: 7.9663 |
Chromosome | Chromosome/Scaffold: 2974 Start: 51011 End: 52852 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 204 | 285 | 8.8e-34 |
WCVAKGSVSVASLQAALDYACGTGGVDCSQIQPGAACYNPNTLQNHASFAFNNYYQKNPVATSCDFGGTAVVVSSNPSSGTC |
Full Sequence |
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Protein Sequence Length: 414 Download |
MVSSQLLLLF LLCSSLLTLP TSGTGTLAGL FYNGGKNAAS SSKILSFLPS SQIRGPRYTS 60 WGIHQLFPSS RRELSSKVET FVNKDGVTIP TTTPTIITVP ATIPTPTTAT NNPPVTPLPL 120 PTTIPPTNPA ATTPPVTVPG GVGQQPVTNP ATTYPVPSTG TVPNPAGTVP PPAGAVPNPA 180 VAPPAVTNPP AGTTNAPGVS GQSWCVAKGS VSVASLQAAL DYACGTGGVD CSQIQPGAAC 240 YNPNTLQNHA SFAFNNYYQK NPVATSCDFG GTAVVVSSNP SSGTCTYPSS SSSSSSPSSS 300 STSSPPTTTA TSPLTPTSPT PSTSTTNPVT TNPTTTTSPS GNGTSGTAVT PPSVLNSSSS 360 SPTAGTANVF GFDNPPGVTT EGPMASDSAA LQPLLRRVVL AVCLIAGAVV FDV* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-20 | 203 | 274 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-30 | 203 | 279 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN65737.1 | 0 | 64 | 285 | 193 | 420 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_001132166.2 | 1.99993e-41 | 62 | 305 | 137 | 416 | hypothetical protein LOC100193588 [Zea mays] |
RefSeq | XP_002276666.1 | 0 | 64 | 285 | 289 | 516 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319461.1 | 0 | 24 | 413 | 256 | 615 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512573.1 | 0 | 26 | 413 | 30 | 406 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-18 | 203 | 292 | 12 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |