Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10001764 |
Family | CBM43 |
Protein Properties | Length: 354 Molecular Weight: 36585.3 Isoelectric Point: 3.9052 |
Chromosome | Chromosome/Scaffold: 696 Start: 75983 End: 77044 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 238 | 316 | 4.3e-31 |
WCVAKPSVPDPIMQEAMNYACGSGADCESLQSSGPCFQPDTVYAHASYAFNSYWQRTKGAGGSCSFGGTAILVTVDPSQ |
Full Sequence |
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Protein Sequence Length: 354 Download |
MVNAEEASNT APYVASHFSL TPYDTLSPQN SPADCLNPPQ QGLPQPLPPP SSSSSSGGSG 60 SDFPTPSSPT ILPPPGALAP ILPPPATPGI DVPGQPPSDT FPGPPTVVPS PPSDVFPGPP 120 STVPSPLSEV LPGPPESVPS PPIDVLPGPP SFIPSPPSEV LPGPASFVPS PPSEVLPSPP 180 SFVPSPPAYV NPVPNPPEAE APPTFQGPSP PMAFLPPIVY PPPTGPPRPK TGPPAALWCV 240 AKPSVPDPIM QEAMNYACGS GADCESLQSS GPCFQPDTVY AHASYAFNSY WQRTKGAGGS 300 CSFGGTAILV TVDPSQYNYS YYFYLKQPLE LIMLLNYVVP KFAGYDGCHF VYY* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-21 | 237 | 308 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-35 | 237 | 321 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002264622.1 | 2e-40 | 191 | 329 | 122 | 267 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002264966.1 | 2.94273e-44 | 1 | 352 | 60 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312230.1 | 0 | 6 | 325 | 2 | 302 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315076.1 | 1.99965e-42 | 238 | 316 | 1 | 79 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 0 | 137 | 352 | 80 | 262 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000001 | 235 | 315 | 10 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CF604722 | 116 | 237 | 352 | 2e-39 |
EG434912 | 131 | 208 | 338 | 2e-38 |
EG434934 | 104 | 235 | 338 | 3e-38 |
EG434915 | 104 | 235 | 338 | 4e-38 |
EG434946 | 104 | 235 | 338 | 4e-38 |
Sequence Alignments (This image is cropped. Click for full image.) |
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